Methanosarcina mazei Go1

CocciNon-motileAnaerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanosarcinales

Family

Methanosarcinaceae

Genus

Methanosarcina

Description

Methanosarcina spp. are anaerobic methanogens that can form multicellular colonies. They can be found in a multitude of environments including the rumen in cows, sheep, goats, deer, ect. and the large intestine in humans. There has been recent study on M. barkeri because evidence of a 22nd amino acid named pyrrolysine has been detected. This protein was located in the active site of the enzyme methogenic methylamine methyltransferase, which catabolizes methylamines leading to methane production.Clearly containing the largest archaeal genome (4th largest of Prokaryotes) with 5,751,492 bp, M. acetivorans these genes for a multitude of different properties not shown by other archaeons. Another sequenced species, M. mazei also has a large genome in relation to other archaeons with 4,096,345 bp. An interesting discovery in the M. acetivorans genome was the presence of chaperonins GroEL/GroES that were believed to occur only in bacteria and eukaryotic cell organelles of bacterial ancestry. Three other main chaperoning systems were discovered as well. A pivotal question is then did M. acetivorans receive the genes by inheritance or by lateral transfer from a bacterium, which was suggested for M. mazei. The answer could dictate whether the common ancestor had these genes or whether they were a bacterial product that have been transferred.All the other methanogens can utilize no more than two methanogenic substrates and possess a single pathway for methanogenesis. Methanosarcina, on the other hand, has all three known pathways for methanogenesis and can utilize no less than nine methanogenic substrates. M. barkeri and M. mazei are autotrophic, but M. acetivorans is not.It also has a number of distinct morphological forms including single cells with and without a cell envelope, as well as multicellular packets and lamina. The packets and lamina showed internal morphological diversity, indicating possible cell differentiation. The fact that cells in the lamina secrete different extracellular material gives light to possible cell specialization as well. They are coccoid and have cell walls of protein, often having an external wall of a heteropolysaccharide. Most Methanosarcina spp. are surrounded by a polymeric network of methanochondroitin that is external to an S-layer. The term "matrix" has been proposed to describe this structure. It has been demonstrated by Xun et al. (1990, as cited in Ferry p.89) that the methanochondroitin causes cell-cell adhesion.(From http://microbewiki.kenyon.edu/index.php/Methanosarcina) (MicrobeWiki: Methanosarcina)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanosarcina
SpeciesMethanosarcina mazei
StrainGo1

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceLithotroph
PathogenicityNo

Genome Summary

Methanosarcina mazei Go1


Gene Summary

Adenine Count

1201032 bp

Thymine Count

1195948 bp

Guanine Count

850357 bp

Cytosine Count

849008 bp

Genome Length

4096345 bp

Protein-coding Genes

3449 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
abc transporter substrate-binding proteinMM_RS00005Not Available+522 - 212658158.1
abc transporter substrate-binding proteinMM_RS00010Not Available+2677 - 428458737.5
abc transporter permeaseMM_RS00015Not Available+4615 - 560736227.0
abc transporter permeaseMM_RS00020Not Available+5630 - 648730909.6
abc transporter atp-binding proteinMM_RS00025Not Available+6523 - 750035956.6
abc transporter atp-binding proteinMM_RS00030Not Available+7490 - 810122742.6
tigr00341 family proteinMM_RS00035Not Available-8186 - 934340677.5
tigr00341 family proteinMM_RS00040Not Available-9608 - 1090045163.9
duf998 domain-containing proteinMM_RS00045Not Available-11087 - 1170721723.7
hypothetical proteinMM_RS18865Not Available+12435 - 125905569.88

Displaying genes 1 – 10 of 3514 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

122 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da

Displaying 1–10 of 122 metabolites