Bacteroides fragilis NCTC 9343

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis NCTC 9343 is a significant anaerobic, Gram-negative bacterium known for its role in the human microbiome. This species is a chemoorganotroph, deriving energy from organic compounds, and typically exists as single rod-shaped cells. It is mesophilic, with an optimal growth temperature of 37°C, which aligns with the human body temperature, indicating its adaptation to a host-associated habitat. Bacteroides fragilis is characterized by having three replicons and a double membrane system, which is typical of Gram-negative bacteria. While it possesses flagella, this strain is non-motile, suggesting that it relies on other mechanisms for dispersal and colonization within its host environment. This bacterium is free-living in the human gut, where it plays a complex role in maintaining health; however, it is also recognized for its pathogenicity, which can lead to opportunistic infections, particularly in immunocompromised individuals. Ecologically, Bacteroides fragilis contributes to the gut microbiota's stability and functionality, aiding in digestion and the synthesis of essential vitamins. Its presence in the intestines is crucial for a balanced microbial community, reflecting the intricate relationships between host and microbiota. Understanding the traits of Bacteroides fragilis NCTC 9343 is essential for comprehending its dual nature as both a beneficial commensal organism and a potential pathogen.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
StrainATCC 25285

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis NCTC 9343
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityYes

Genome Summary

Bacteroides fragilis NCTC 9343 plasmid pBF9343, complete sequence.

Gene Summary

Adenine Count

11492 bp

Thymine Count

13282 bp

Guanine Count

5996 bp

Cytosine Count

5790 bp

Genome Length

36560 bp

Protein-coding Genes

47 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hu family dna-binding proteinBF9343_RS21425Not AvailableNegative15531 - 1580910575.0
hypothetical proteinBF9343_RS21430Not AvailableNegative15821 - 1617413757.0
topoisomerase c-terminal repeat-containing proteinBF9343_RS21435Not AvailableNegative16171 - 1700731640.1
hypothetical proteinBF9343_RS21440Not AvailableNegative17008 - 1771226433.7
ph domain-containing proteinBF9343_RS21445Not AvailableNegative17693 - 1819620058.9
duf3991 domain-containing proteinBF9343_RS21450Not AvailableNegative18193 - 1930242749.9
duf3945 domain-containing proteinBF9343_RS21455Not AvailableNegative19307 - 2086658788.4
duf4099 domain-containing proteinBF9343_RS21460Not AvailableNegative20868 - 2158727605.2
m23 family metallopeptidaseBF9343_RS21465Not AvailablePositive21628 - 2229325075.2
zeta toxin family proteinBF9343_RS21470Not AvailableNegative22340 - 2320632832.7

Displaying genes 21 – 30 of 8849 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

109 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 109 metabolites

Health Effects

No health effects information available for this bacterium.