Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

microaerophile

Kingdom

Thermotogati

Phylum

Deinococcota

Class

Deinococci

Order

Deinococcales

Family

Deinococcaceae

Genus

Deinococcus

Description

Deinococcus radiodurans R1, also known by its ATCC and DSM designations (ATCC 13939, DSM 20539), is a notable microaerophilic bacterium characterized by its remarkable resilience to extreme environmental conditions, particularly ionizing radiation and desiccation. This organism possesses a single replicon, which is essential for its genetic stability and integrity, allowing it to withstand and recover from DNA damage that would be lethal to many other organisms. D. radiodurans R1 is motile, as it possesses flagella, which contributes to its ability to navigate its environment, potentially aiding in colonization and nutrient acquisition. Its microaerophilic nature indicates that it thrives in environments with low oxygen levels, which can be typical of certain terrestrial or aquatic habitats. The genome of D. radiodurans R1 is accessible under the accession number NC_001263.1, providing a resource for further research into its genetic makeup and mechanisms of resistance. Understanding the genetic and physiological attributes of this bacterium not only sheds light on its survival strategies but also has implications for bioremediation and biotechnology. The extreme resilience of D. radiodurans to harsh conditions makes it a valuable model organism for studying DNA repair mechanisms and could inform applications in areas such as waste management in radioactive environments. Overall, D. radiodurans R1 exemplifies the incredible adaptability of microorganisms to extreme ecological niches.

Taxonomy

KingdomThermotogati
PhylumDeinococcota
ClassDeinococci
OrderDeinococcales
FamilyDeinococcaceae
GenusDeinococcus
SpeciesDeinococcus radiodurans
StrainR1 = ATCC 13939 = DSM 20539

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539


Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2410 genes

Non-Coding Genes

329 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
eal domain-containing proteinDR_RS00005Not AvailableNegative93 - 117939121.5
chromosomal replication initiator protein dnaaDR_RS00010Not AvailableNegative1904 - 330452044.9
dna damage response protein ddrcDR_RS00015Not AvailableNegative3556 - 425125150.8
nudix domain-containing proteinDR_RS00020Not AvailablePositive4387 - 543037378.4
trmb family transcriptional regulatorDR_RS00025Not AvailablePositive5438 - 611524565.4
metal-dependent hydrolaseDR_RS00030Not AvailableNegative6162 - 684524490.0
diadenylate cyclase cdaaDR_RS00035Not AvailablePositive7010 - 782228920.7
ybbr-like domain-containing proteinDR_RS00040Not AvailablePositive7819 - 885937097.2
vanw family proteinDR_RS00045Not AvailablePositive8925 - 1028348485.1
is4-like element isdra7 family transposaseDR_RS00050Not AvailablePositive10431 - 1161543822.8

Displaying genes 1 – 10 of 2739 in total

Metabolites

102 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 102 metabolites

Health Effects

No health effects information available for this bacterium.