Subtercola boreus strain P28004

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Subtercola

Description

Subtercola boreus strain P28004 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number NBXE00000000.1, providing a reference for further studies and comparative analysis within the genus Subtercola. The streamlined genomic configuration with a single replicon may suggest a simplified regulatory network, potentially impacting its adaptability and metabolic capabilities. While specific phenotypic traits and ecological roles of Subtercola boreus strain P28004 are not provided, the characteristics of related bacteria in the genus Subtercola often point to a role in soil ecosystems, where they may contribute to nutrient cycling or organic matter decomposition. Understanding the genomic organization of strain P28004 can offer insights into its ecological function, as bacteria with single replicons may exhibit different survival strategies compared to those with multiple replicons. Overall, the genomic simplicity of Subtercola boreus strain P28004 could be a factor in its ecological interactions, particularly in soil environments where efficient resource utilization is critical. Further research into this strain could illuminate its specific contributions to soil health and microbial diversity.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusSubtercola
SpeciesSubtercola boreus
Strainstrain P28004

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Subtercola boreus strain P28004 contig00120, whole genome shotgun

Gene Summary

Adenine Count

614028 bp

Thymine Count

612372 bp

Guanine Count

1254042 bp

Cytosine Count

1245239 bp

Genome Length

3725681 bp

Protein-coding Genes

3326 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase subunit sigmaB7R25_12010Not AvailableNegative2579000 - 257959322563.0
dna-directed rna polymerase subunit betaB7R25_12015Not AvailableNegative2579803 - 258043222516.4
Trna-lysNot AvailableNot AvailablePositive2580542 - 2580617Not Available
gntr family transcriptional regulatorB7R25_12025Not AvailablePositive2580804 - 258154426575.2
2,5-diketo-d-gluconic acid reductaseB7R25_12030Not AvailablePositive2581541 - 258239230102.4
hypothetical proteinB7R25_12035Not AvailablePositive2582424 - 258379747300.1
short-chain dehydrogenaseB7R25_12040Not AvailablePositive2583862 - 258463226093.4
iclr family transcriptional regulatorB7R25_12045Not AvailableNegative2584805 - 258556327030.8
beta-ketoadipyl coa thiolaseB7R25_12050Not AvailableNegative2585770 - 258694540714.5
3-oxoadipate coa-transferaseB7R25_12055Not AvailableNegative2586942 - 258761323569.3

Displaying genes 2331 – 2340 of 3377 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.