Escherichia coli strain 34VL

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 34VL is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. It is a facultative anaerobe, thriving optimally at 37°C and classified as mesophilic. This strain is characterized by its ability to exist in pairs or singles, and it possesses a single replicon and two membranes, typical of Gram-negative bacteria. E. coli strain 34VL is primarily host-associated, exhibiting a wide range of biotic relationships with various hosts, including Homo sapiens, Gallus gallus, Bos taurus, and many others across different taxa. This wide host range highlights its ecological versatility, allowing it to thrive in diverse environments, from mammals to plants and even some invertebrates. Clinically, strain 34VL is associated with numerous health effects, including urinary tract infections (UTIs), gastrointestinal infections, and neonatal meningitis, among others. Its pathogenic potential is significant, as it can lead to severe conditions such as hemolytic uremic syndrome (HUS), septicemia, and even colorectal cancer. The strain's ability to cause a variety of infections, including foodborne illnesses and complications related to pregnancy, underscores its importance as a pathogen in both human and veterinary medicine. The ecological insight from E. coli strain 34VL's diverse host associations and pathogenicity suggests that it plays a crucial role in the microbiome dynamics of various species. Its adaptability and potential for virulence highlight the need for ongoing surveillance and research to better understand its impact on health and disease across different hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain 34VL

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 34VL
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain 34VL


Gene Summary

Adenine Count

1594178 bp

Thymine Count

1584054 bp

Guanine Count

1513332 bp

Cytosine Count

1521202 bp

Genome Length

6212766 bp

Protein-coding Genes

6911 genes

Non-Coding Genes

545 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Putative large terminase subunitB1K96_00005Not AvailableNegative9 - 93534915.5
Trna-thr;Not AvailableNot AvailablePositive27 - 102Not Available
Trna-ile;Not AvailableNot AvailablePositive45 - 121Not Available
Trna-asp;Not AvailableNot AvailablePositive61 - 137Not Available
Trna-glu;Not AvailableNot AvailablePositive62 - 137Not Available
Trna-met;Not AvailableNot AvailablePositive1 - 77Not Available
Trna-arg;Not AvailableNot AvailablePositive10 - 86Not Available
Trna-arg;Not AvailableNot AvailablePositive28 - 99Not Available
Trna-ile;Not AvailableNot AvailablePositive58 - 131Not Available
Trna-glu;Not AvailableNot AvailablePositive67 - 142Not Available

Displaying genes 1 – 10 of 7456 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 74 in total