Phyllobacterium zundukense strain Tri-38

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Phyllobacteriaceae

Genus

Phyllobacterium

Description

Phyllobacterium zundukense strain Tri-38 is a Gram-negative bacterium characterized by its rod shape. This strain features a single replicon, indicating a relatively streamlined genomic structure. The accession number for this strain is MZMT00000000.1, which allows for its identification and retrieval in genomic databases. As a member of the Phyllobacterium genus, strain Tri-38 is likely associated with various ecological niches, particularly in soil and plant-associated environments. Members of this genus are known for their potential role in nitrogen fixation and plant growth promotion, although specific functions of strain Tri-38 are not detailed in the provided data. The unicellular structure and Gram-negative nature suggest that this strain may possess a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of Gram-negative bacteria. This structural feature can influence the bacterium's interactions with its environment, including its ability to form biofilms or its susceptibility to antibiotics. In summary, Phyllobacterium zundukense strain Tri-38 represents a specific lineage within the broader context of beneficial soil bacteria. Its rod shape and Gram-negative classification may facilitate its ecological roles, potentially contributing to soil health and plant interactions, although further studies would be necessary to elucidate its precise ecological functions and applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyPhyllobacteriaceae
GenusPhyllobacterium
SpeciesPhyllobacterium zundukense
Strainstrain Tri-38

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phyllobacterium zundukense strain Tri-38 NODE_11, whole genome

Gene Summary

Adenine Count

1275259 bp

Thymine Count

1270926 bp

Guanine Count

1703476 bp

Cytosine Count

1704399 bp

Genome Length

5954060 bp

Protein-coding Genes

5599 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribulose-bisphosphate carboxylase large subunitB5P45_28860Not AvailablePositive5859864 - 586132454051.6
ribulose bisphosphate carboxylase small subunitB5P45_28865Not AvailablePositive5861335 - 586175416015.7
cbbx proteinB5P45_28870Not AvailablePositive5861747 - 586268535150.9
ribulose-phosphate 3-epimeraseB5P45_28875Not AvailablePositive5862682 - 586337124263.2
thioredoxin family proteinB5P45_28880Not AvailablePositive5863392 - 586394920364.0
cytochrome cB5P45_28885Not AvailableNegative5863995 - 586438113668.5
hypothetical proteinB5P45_28890Not AvailablePositive5864712 - 58649217905.73
abc transporter substrate-binding proteinB5P45_28895Not AvailablePositive5864998 - 586593933889.4
abc transporter permeaseB5P45_28900Not AvailablePositive5866024 - 586675827223.1
abc transporter atp-binding proteinB5P45_28905Not AvailablePositive5866718 - 586747628218.4

Displaying genes 5571 – 5580 of 5666 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.