Phyllobacterium zundukense strain Tri-38

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Phyllobacteriaceae

Genus

Phyllobacterium

Description

Phyllobacterium zundukense strain Tri-38 is a Gram-negative bacterium characterized by its rod shape. This strain features a single replicon, indicating a relatively streamlined genomic structure. The accession number for this strain is MZMT00000000.1, which allows for its identification and retrieval in genomic databases. As a member of the Phyllobacterium genus, strain Tri-38 is likely associated with various ecological niches, particularly in soil and plant-associated environments. Members of this genus are known for their potential role in nitrogen fixation and plant growth promotion, although specific functions of strain Tri-38 are not detailed in the provided data. The unicellular structure and Gram-negative nature suggest that this strain may possess a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of Gram-negative bacteria. This structural feature can influence the bacterium's interactions with its environment, including its ability to form biofilms or its susceptibility to antibiotics. In summary, Phyllobacterium zundukense strain Tri-38 represents a specific lineage within the broader context of beneficial soil bacteria. Its rod shape and Gram-negative classification may facilitate its ecological roles, potentially contributing to soil health and plant interactions, although further studies would be necessary to elucidate its precise ecological functions and applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyPhyllobacteriaceae
GenusPhyllobacterium
SpeciesPhyllobacterium zundukense
Strainstrain Tri-38

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phyllobacterium zundukense strain Tri-38 NODE_11, whole genome

Gene Summary

Adenine Count

1275259 bp

Thymine Count

1270926 bp

Guanine Count

1703476 bp

Cytosine Count

1704399 bp

Genome Length

5954060 bp

Protein-coding Genes

5599 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-carboxy-cis,cis-muconate cycloisomeraseB5P45_28040Not AvailableNegative5677504 - 567857438367.6
protocatechuate 3,4-dioxygenase subunit alphaB5P45_28045Not AvailableNegative5678578 - 567919222849.4
protocatechuate 3,4-dioxygenase subunit betaB5P45_28050Not AvailableNegative5679192 - 567993227875.2
4-carboxymuconolactone decarboxylaseB5P45_28055Not AvailableNegative5679945 - 568034914680.5
3-oxoadipate enol-lactonaseB5P45_28060Not AvailableNegative5680346 - 568115229152.2
pca operon transcription factor pcaqB5P45_28065Not AvailablePositive5681254 - 568217733822.5
4-hydroxybenzoate 3-monooxygenaseB5P45_28070Not AvailableNegative5682186 - 568335843287.5
hypothetical proteinB5P45_28075Not AvailablePositive5683471 - 568436433757.1
iclr family transcriptional regulatorB5P45_28080Not AvailableNegative5684367 - 568512227642.5
3-oxoadipate--succinyl-coa transferase subunit aB5P45_28085Not AvailablePositive5685255 - 568611531306.5

Displaying genes 5411 – 5420 of 5666 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.