Clostridium oryzae strain DSM 28571

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium oryzae strain DSM 28571 is an anaerobic bacterium, indicating that it thrives in environments devoid of oxygen. This trait is characteristic of many members of the Clostridium genus, which are often found in soil, decaying organic matter, and the intestines of animals. The strain is notable for having a single replicon, which suggests a streamlined genomic organization. This can be an advantage in anaerobic conditions where energy conservation is crucial for survival and growth. C. oryzae has been assigned the accession number MZGV00000000.1, which serves as a unique identifier for genomic data related to this strain. This accession can be used to access specific genetic information, facilitating further research and understanding of its biological properties. The ecological significance of C. oryzae may relate to its role in the decomposition of organic matter in anaerobic environments. By breaking down complex organic compounds, this bacterium could contribute to nutrient cycling and the maintenance of soil health. Understanding the specific functions and interactions of C. oryzae within its ecosystem could provide insights into its potential applications in biotechnology and environmental management.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium oryzae
Strainstrain DSM 28571

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium oryzae strain DSM 28571 CLORY_contig000176, whole

Gene Summary

Adenine Count

1719144 bp

Thymine Count

1676017 bp

Guanine Count

864313 bp

Cytosine Count

815328 bp

Genome Length

5074802 bp

Protein-coding Genes

4422 genes

Non-Coding Genes

165 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methylthioribose-1-phosphate isomeraseCLORY_05420Not AvailablePositive611215 - 61229740258.5
transketolaseCLORY_05430Not AvailablePositive612316 - 61323033671.3
1-deoxy-d-xylulose-5-phosphate synthaseCLORY_05440Not AvailablePositive613243 - 61425037018.2
2,3-diketo-5-methylthiopentyl-1-phosphate enolaseCLORY_05450Not AvailablePositive614269 - 61541141548.2
hypothetical proteinCLORY_05460Not AvailablePositive615680 - 61597010969.7
arabinose metabolism transcriptional repressorCLORY_05470Not AvailablePositive616081 - 61717841671.9
l-ribulose-5-phosphate 4-epimerase ulafCLORY_05480Not AvailablePositive617542 - 61823425760.8
transaldolaseCLORY_05490Not AvailablePositive618253 - 61890023425.7
hypothetical proteinCLORY_05500Not AvailablePositive619587 - 61999114730.4
transposase is66 family proteinCLORY_05510Not AvailableNegative621080 - 62252256022.1

Displaying genes 581 – 590 of 4587 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.