Clostridium oryzae strain DSM 28571

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium oryzae strain DSM 28571 is an anaerobic bacterium, indicating that it thrives in environments devoid of oxygen. This trait is characteristic of many members of the Clostridium genus, which are often found in soil, decaying organic matter, and the intestines of animals. The strain is notable for having a single replicon, which suggests a streamlined genomic organization. This can be an advantage in anaerobic conditions where energy conservation is crucial for survival and growth. C. oryzae has been assigned the accession number MZGV00000000.1, which serves as a unique identifier for genomic data related to this strain. This accession can be used to access specific genetic information, facilitating further research and understanding of its biological properties. The ecological significance of C. oryzae may relate to its role in the decomposition of organic matter in anaerobic environments. By breaking down complex organic compounds, this bacterium could contribute to nutrient cycling and the maintenance of soil health. Understanding the specific functions and interactions of C. oryzae within its ecosystem could provide insights into its potential applications in biotechnology and environmental management.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium oryzae
Strainstrain DSM 28571

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium oryzae strain DSM 28571 CLORY_contig000176, whole

Gene Summary

Adenine Count

1719144 bp

Thymine Count

1676017 bp

Guanine Count

864313 bp

Cytosine Count

815328 bp

Genome Length

5074802 bp

Protein-coding Genes

4422 genes

Non-Coding Genes

165 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ferredoxin-3CLORY_05220Not AvailableNegative590230 - 59092525173.8
transcriptional regulator fixkCLORY_05230Not AvailablePositive591013 - 59168725506.2
yibe/f-like proteinCLORY_05240Not AvailablePositive591832 - 59299842977.0
yibe/f-like proteinCLORY_05250Not AvailablePositive592995 - 59379529285.1
cyclic di-gmp phosphodiesterase gmrCLORY_05260Not AvailableNegative594121 - 59599271011.6
Trna-serNot AvailableNot AvailablePositive596227 - 596316Not Available
dna polymerase iii subunit tauCLORY_05280Not AvailablePositive596751 - 59835560614.3
nucleoid-associated proteinCLORY_05290Not AvailablePositive598612 - 59895012023.6
recombination protein recrCLORY_05300Not AvailablePositive599016 - 59961221870.7
major facilitator superfamily proteinCLORY_05310Not AvailablePositive599631 - 60091147970.8

Displaying genes 561 – 570 of 4587 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.