Clostridium oryzae strain DSM 28571

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium oryzae strain DSM 28571 is an anaerobic bacterium, indicating that it thrives in environments devoid of oxygen. This trait is characteristic of many members of the Clostridium genus, which are often found in soil, decaying organic matter, and the intestines of animals. The strain is notable for having a single replicon, which suggests a streamlined genomic organization. This can be an advantage in anaerobic conditions where energy conservation is crucial for survival and growth. C. oryzae has been assigned the accession number MZGV00000000.1, which serves as a unique identifier for genomic data related to this strain. This accession can be used to access specific genetic information, facilitating further research and understanding of its biological properties. The ecological significance of C. oryzae may relate to its role in the decomposition of organic matter in anaerobic environments. By breaking down complex organic compounds, this bacterium could contribute to nutrient cycling and the maintenance of soil health. Understanding the specific functions and interactions of C. oryzae within its ecosystem could provide insights into its potential applications in biotechnology and environmental management.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium oryzae
Strainstrain DSM 28571

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium oryzae strain DSM 28571 CLORY_contig000176, whole

Gene Summary

Adenine Count

1719144 bp

Thymine Count

1676017 bp

Guanine Count

864313 bp

Cytosine Count

815328 bp

Genome Length

5074802 bp

Protein-coding Genes

4422 genes

Non-Coding Genes

165 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative sensory transducer protein yfmsCLORY_37510Not AvailableNegative4126958 - 412799537563.5
hth-type transcriptional regulator yessCLORY_37520Not AvailableNegative4128161 - 413039586590.5
putative multiple-sugar transport system permease ytepCLORY_37530Not AvailablePositive4130788 - 413175636610.7
l-arabinose transport system permease protein araqCLORY_37540Not AvailablePositive4131772 - 413268933975.2
hypothetical proteinCLORY_37550Not AvailablePositive4132747 - 413424055421.1
hth-type transcriptional activator rhasCLORY_37560Not AvailableNegative4134280 - 413520636858.3
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--ld- lysine ligaseCLORY_37570Not AvailablePositive4135699 - 413717154803.7
proton/sodium-glutamate symport proteinCLORY_37580Not AvailablePositive4137190 - 413844944691.3
mercuric resistance operon regulatory proteinCLORY_37590Not AvailableNegative4138427 - 413925431971.6
multidrug resistance protein normCLORY_37600Not AvailablePositive4139350 - 414073550032.2

Displaying genes 3761 – 3770 of 4587 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.