Clostridium oryzae strain DSM 28571

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium oryzae strain DSM 28571 is an anaerobic bacterium, indicating that it thrives in environments devoid of oxygen. This trait is characteristic of many members of the Clostridium genus, which are often found in soil, decaying organic matter, and the intestines of animals. The strain is notable for having a single replicon, which suggests a streamlined genomic organization. This can be an advantage in anaerobic conditions where energy conservation is crucial for survival and growth. C. oryzae has been assigned the accession number MZGV00000000.1, which serves as a unique identifier for genomic data related to this strain. This accession can be used to access specific genetic information, facilitating further research and understanding of its biological properties. The ecological significance of C. oryzae may relate to its role in the decomposition of organic matter in anaerobic environments. By breaking down complex organic compounds, this bacterium could contribute to nutrient cycling and the maintenance of soil health. Understanding the specific functions and interactions of C. oryzae within its ecosystem could provide insights into its potential applications in biotechnology and environmental management.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium oryzae
Strainstrain DSM 28571

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium oryzae strain DSM 28571 CLORY_contig000176, whole

Gene Summary

Adenine Count

1719144 bp

Thymine Count

1676017 bp

Guanine Count

864313 bp

Cytosine Count

815328 bp

Genome Length

5074802 bp

Protein-coding Genes

4422 genes

Non-Coding Genes

165 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
spbc2 prophage-derived glycosyltransferase sunsCLORY_36510Not AvailablePositive4018648 - 402044469820.4
hypothetical proteinCLORY_36520Not AvailableNegative4020604 - 40208769698.32
udp-n-acetyl-d-glucosamine 6-dehydrogenaseCLORY_36530Not AvailableNegative4020957 - 402227349570.9
hypothetical proteinCLORY_36540Not AvailablePositive4022649 - 402351832558.8
hth-type transcriptional repressor bm3r1CLORY_36550Not AvailableNegative4023919 - 402450622380.8
abc-2 family transporter proteinCLORY_36560Not AvailablePositive4024698 - 402670172535.7
cold shock protein 2CLORY_36570Not AvailableNegative4027218 - 40274187227.38
bacitracin export permease protein bcebCLORY_36580Not AvailableNegative4028019 - 402991471483.4
bacitracin export atp-binding protein bceaCLORY_36590Not AvailableNegative4029914 - 403069328960.1
sensor histidine kinase grasCLORY_36600Not AvailableNegative4030898 - 403190238756.3

Displaying genes 3661 – 3670 of 4587 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.