Nitrobacter vulgaris strain Ab1 NvAb1_97

Gram-negative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Nitrobacter

Description

Nitrobacter vulgaris strain Ab1 (NvAb1_97) is a Gram-negative bacterium characterized by the presence of flagella, which suggests its motility capabilities. This strain possesses a single replicon, indicating a streamlined genomic organization. The genomic data for Nitrobacter vulgaris strain Ab1 can be accessed under the accession number MWPQ00000000.1. As a member of the Nitrobacter genus, Nitrobacter vulgaris plays a critical role in the nitrogen cycle, particularly in the process of nitrification. This process involves the oxidation of nitrite to nitrate, contributing to soil fertility and influencing the availability of nitrogen for plant uptake. The motility provided by its flagella may enhance its ability to colonize and thrive in various environments, where it can effectively participate in these essential biochemical processes. Understanding the traits of Nitrobacter vulgaris strain Ab1 can offer insights into its ecological significance, particularly in agricultural contexts where nitrogen management is crucial for sustainable crop production. Its ability to effectively engage in nitrification processes underscores its potential importance in maintaining soil health and fertility in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusNitrobacter
SpeciesNitrobacter vulgaris
Strainstrain Ab1 NvAb1_97

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nitrobacter vulgaris strain Ab1 NvAb1_97, whole genome shotgun

Gene Summary

Adenine Count

785055 bp

Thymine Count

781644 bp

Guanine Count

1163358 bp

Cytosine Count

1170419 bp

Genome Length

3900573 bp

Protein-coding Genes

3492 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
deoxyuridine 5'-triphosphate nucleotidohydrolaseB2M20_00230Not AvailablePositive50547 - 5100515729.2
hypothetical proteinB2M20_00235Not AvailableNegative51024 - 512698442.04
two-component sensor histidine kinaseB2M20_00240Not AvailablePositive51639 - 5415592349.0
23s ribosomal rnaNot AvailableNot AvailablePositive52094 - 54923Not Available
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsaeB2M20_00245Not AvailablePositive54152 - 5567555437.1
5s ribosomal rnaNot AvailableNot AvailablePositive54985 - 55099Not Available
pilus assembly protein pilzB2M20_00250Not AvailablePositive55781 - 5610111948.3
mannose-1-phosphate guanylyltransferaseB2M20_00255Not AvailablePositive56391 - 5711326005.0
double-strand break repair protein addbB2M20_00260Not AvailablePositive57189 - 60341114627.0
thiol reductase thioredoxinB2M20_00270Not AvailablePositive63939 - 6425911428.0

Displaying genes 61 – 70 of 3558 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.