Nitrobacter vulgaris strain Ab1 NvAb1_97

Gram-negative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Nitrobacter

Description

Nitrobacter vulgaris strain Ab1 (NvAb1_97) is a Gram-negative bacterium characterized by the presence of flagella, which suggests its motility capabilities. This strain possesses a single replicon, indicating a streamlined genomic organization. The genomic data for Nitrobacter vulgaris strain Ab1 can be accessed under the accession number MWPQ00000000.1. As a member of the Nitrobacter genus, Nitrobacter vulgaris plays a critical role in the nitrogen cycle, particularly in the process of nitrification. This process involves the oxidation of nitrite to nitrate, contributing to soil fertility and influencing the availability of nitrogen for plant uptake. The motility provided by its flagella may enhance its ability to colonize and thrive in various environments, where it can effectively participate in these essential biochemical processes. Understanding the traits of Nitrobacter vulgaris strain Ab1 can offer insights into its ecological significance, particularly in agricultural contexts where nitrogen management is crucial for sustainable crop production. Its ability to effectively engage in nitrification processes underscores its potential importance in maintaining soil health and fertility in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusNitrobacter
SpeciesNitrobacter vulgaris
Strainstrain Ab1 NvAb1_97

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nitrobacter vulgaris strain Ab1 NvAb1_97, whole genome shotgun

Gene Summary

Adenine Count

785055 bp

Thymine Count

781644 bp

Guanine Count

1163358 bp

Cytosine Count

1170419 bp

Genome Length

3900573 bp

Protein-coding Genes

3492 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Ncrna_class:srp_rnaNot AvailableNot AvailablePositive41506 - 41602Not Available
d-glycerate dehydrogenaseB2M20_00190Not AvailablePositive41799 - 4280036633.0
adenylyltransferaseB2M20_00195Not AvailableNegative42958 - 4375828435.1
peptidoglycan-binding proteinB2M20_00200Not AvailablePositive43940 - 4527445980.1
dna-formamidopyrimidine glycosylaseB2M20_00205Not AvailableNegative45307 - 4618832414.0
glyoxalase/bleomycin resistance/extradiol dioxygenase family proteinB2M20_00210Not AvailableNegative46222 - 4660214137.9
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylaseB2M20_00215Not AvailablePositive46725 - 4748327826.2
2-polyprenylphenol 6-hydroxylaseB2M20_00220Not AvailablePositive47480 - 4904857717.3
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthaseB2M20_00225Not AvailablePositive49114 - 5055050768.3
16s ribosomal rnaNot AvailableNot AvailablePositive49802 - 51298Not Available

Displaying genes 51 – 60 of 3558 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.