Nitrobacter vulgaris strain Ab1 NvAb1_97

Gram-negative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Nitrobacter

Description

Nitrobacter vulgaris strain Ab1 (NvAb1_97) is a Gram-negative bacterium characterized by the presence of flagella, which suggests its motility capabilities. This strain possesses a single replicon, indicating a streamlined genomic organization. The genomic data for Nitrobacter vulgaris strain Ab1 can be accessed under the accession number MWPQ00000000.1. As a member of the Nitrobacter genus, Nitrobacter vulgaris plays a critical role in the nitrogen cycle, particularly in the process of nitrification. This process involves the oxidation of nitrite to nitrate, contributing to soil fertility and influencing the availability of nitrogen for plant uptake. The motility provided by its flagella may enhance its ability to colonize and thrive in various environments, where it can effectively participate in these essential biochemical processes. Understanding the traits of Nitrobacter vulgaris strain Ab1 can offer insights into its ecological significance, particularly in agricultural contexts where nitrogen management is crucial for sustainable crop production. Its ability to effectively engage in nitrification processes underscores its potential importance in maintaining soil health and fertility in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusNitrobacter
SpeciesNitrobacter vulgaris
Strainstrain Ab1 NvAb1_97

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nitrobacter vulgaris strain Ab1 NvAb1_97, whole genome shotgun

Gene Summary

Adenine Count

785055 bp

Thymine Count

781644 bp

Guanine Count

1163358 bp

Cytosine Count

1170419 bp

Genome Length

3900573 bp

Protein-coding Genes

3492 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinB2M20_16075Not AvailablePositive3357218 - 33574367940.32
rna polymerase subunit sigmaB2M20_16080Not AvailablePositive3357436 - 335798120034.6
histidine kinaseB2M20_16085Not AvailableNegative3358033 - 335969760937.3
trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtabB2M20_16090Not AvailableNegative3359978 - 336124646372.1
diaminopimelate epimeraseB2M20_16095Not AvailableNegative3361246 - 336211831482.4
arac family transcriptional regulatorB2M20_16100Not AvailablePositive3362401 - 336312926154.1
simpl domain-containing proteinB2M20_16105Not AvailablePositive3363138 - 336384224021.7
signal recognition particle proteinB2M20_16110Not AvailablePositive3364178 - 336571354781.6
30s ribosomal protein s16B2M20_16115Not AvailablePositive3365792 - 336612412337.1
16s rrna processing protein rimmB2M20_16120Not AvailablePositive3366137 - 336667018722.2

Displaying genes 3091 – 3100 of 3558 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.