Smithella sp. PtaU1.Bin162

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Syntrophia

Order

Syntrophales

Family

Smithellaceae

Genus

Smithella

Description

Smithella sp. PtaU1.Bin162 is characterized by having a single replicon, indicating a streamlined genomic structure. The genome of this organism is represented by the accession number MVRV00000000.1, which serves as a reference for further genomic studies and annotations. While specific metabolic pathways and ecological roles of Smithella sp. PtaU1.Bin162 are not provided, the genus Smithella is generally known for its association with anaerobic environments and its ability to degrade complex organic matter. This suggests that Smithella sp. PtaU1.Bin162 may play a role in the biogeochemical cycling of nutrients, particularly in environments such as sediments or anaerobic digesters, where organic matter decomposition is crucial. The presence of a single replicon can imply efficient replication and possibly a well-adapted lifestyle within its ecological niche. Such traits highlight the potential importance of Smithella sp. PtaU1.Bin162 in microbial communities, particularly in processes related to organic matter turnover and energy flow within anaerobic ecosystems. Understanding this organism's specific contributions could provide insights into the dynamics of microbial communities and their roles in environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassSyntrophia
OrderSyntrophales
FamilySmithellaceae
GenusSmithella
SpeciesSmithella sp. PtaU1.Bin162
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Smithella sp. PtaU1.Bin162 A4E71_contig000191, whole genome

Gene Summary

Adenine Count

983730 bp

Thymine Count

982614 bp

Guanine Count

818382 bp

Cytosine Count

811809 bp

Genome Length

3596535 bp

Protein-coding Genes

3311 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
high-affinity branched-chain amino acid transport atp-binding protein livfA4E71_00079Not AvailableNegative83116 - 8391329465.1
lipopolysaccharide export system atp-binding protein lptbA4E71_00080Not AvailableNegative83907 - 8466527240.3
high-affinity branched-chain amino acid transport system permease protein livhA4E71_00081Not AvailableNegative84710 - 8566334681.1
high-affinity branched-chain amino acid transport system permease protein livhA4E71_00082Not AvailableNegative85669 - 8655031290.6
leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursorA4E71_00083Not AvailableNegative86694 - 8791745824.3
branched-chain amino acid transport protein (azld)A4E71_00084Not AvailableNegative88281 - 8860412130.3
inner membrane protein ygazA4E71_00085Not AvailableNegative88601 - 8927823905.7
3-oxoacyl-(acyl-carrier-protein) reductase fabgA4E71_00086Not AvailableNegative89808 - 9056626691.6
hypothetical proteinA4E71_00087Not AvailableNegative90727 - 95544175149.0
2-keto-3-deoxy-l-rhamnonate aldolaseA4E71_00088Not AvailablePositive95662 - 9606314905.8

Displaying genes 101 – 110 of 3370 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.