Escherichia coli strain SJRP/Ec42664 Cotig_57

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain SJRP/Ec42664 Cotig_57 is a facultative anaerobic, Gram-negative bacterium characterized by its rod shape and the presence of flagella, allowing for mobility. This strain typically exists in pairs or singles and is classified as mesophilic, with an optimal growth temperature of 37°C. It features a biotic relationship that is free-living, and it possesses a single replicon and two membranes. The habitat of this strain is primarily host-associated, with a diverse range of hosts including Homo sapiens, Gallus gallus, Bos taurus, and various other species across multiple taxa such as Metazoa, Mollusca, and Vertebrata. This diversity highlights its ecological adaptability and potential for interaction with various organisms in different environments. E. coli strain SJRP/Ec42664 is known to be pathogenic to humans, associated with a wide array of health effects. These include urinary tract infections (UTIs), gastrointestinal infections, neonatal meningitis, and more severe conditions such as septicemia and hemolytic uremic syndrome (HUS). The strain's role in various diseases underscores its significance in public health and its impact on both animal and human health. The presence of this strain in a variety of hosts suggests its ecological versatility, allowing it to thrive in different environments and contribute to both symbiotic and pathogenic relationships. Understanding the interactions of E. coli strain SJRP/Ec42664 within its host organisms can provide insights into its pathogenic mechanisms and inform strategies for managing infections associated with this strain.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain SJRP/Ec42664 Cotig_57

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain SJRP/Ec42664 Cotig_57
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain SJRP/Ec42664 Cotig_57, whole genome

Gene Summary

Adenine Count

1332125 bp

Thymine Count

1338882 bp

Guanine Count

1364194 bp

Cytosine Count

1387816 bp

Genome Length

5423017 bp

Protein-coding Genes

5132 genes

Non-Coding Genes

378 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein ssebBZL31_13705Not AvailablePositive2660023 - 266079928644.1
sulfurtransferaseBZL31_13710Not AvailableNegative2661617 - 266246230813.5
hypothetical proteinBZL31_13715Not AvailablePositive2662669 - 2667630181395.0
nucleoside-diphosphate kinaseBZL31_13725Not AvailablePositive2670001 - 267043215464.3
bifunctional trna (adenosine(37)-c2)-methyltransferase trmg/ribosomal rna large subunit methyltransferase rlmnBZL31_13730Not AvailablePositive2670582 - 267173643088.0
cytoskeleton protein rodzBZL31_13735Not AvailablePositive2672021 - 267303436174.5
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)BZL31_13740Not AvailablePositive2673061 - 267417940686.1
histidine--trna ligaseBZL31_13745Not AvailablePositive2674290 - 267556447032.2
ancillary secyeg translocon subunitBZL31_13750Not AvailablePositive2675582 - 267620222177.2
outer membrane protein assembly factor bambBZL31_13755Not AvailablePositive2676213 - 267739141859.6

Displaying genes 2981 – 2990 of 5510 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total