Chromohalobacter japonicus strain SMB17

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Halomonadaceae

Genus

Chromohalobacter

Description

Chromohalobacter japonicus strain SMB17 is a Gram-negative, aerobic bacterium characterized by its rod shape. This strain originates from the Zipaquira salt mine, indicating its adaptation to high salinity environments. As a mesophilic organism, it thrives at an optimal temperature of 29°C, suggesting it is well-suited for moderately warm conditions. Notably, Chromohalobacter japonicus strain SMB17 is non-spore-forming and possesses a single replicon, which is significant for its genetic stability and replication mechanisms. The strain's adaptation to the specific habitat of the Zipaquira salt mine highlights its potential role in biogeochemical cycles within saline ecosystems. The ecological insight provided by the habitat and characteristics of strain SMB17 suggests that it may contribute to the microbial diversity and metabolic processes in saline environments. As an aerobic organism, it likely plays a role in oxygen-dependent biochemical reactions, which can impact the overall biogeochemistry of the salt mine ecosystem. This bacterium's traits underscore the importance of microbial life in extreme environments and their potential applications in biotechnology and environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyHalomonadaceae
GenusChromohalobacter
SpeciesChromohalobacter japonicus
Strainstrain SMB17

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatZipaquira salt mine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chromohalobacter japonicus strain SMB17 contig117, whole genome

Gene Summary

Adenine Count

743993 bp

Thymine Count

742706 bp

Guanine Count

1134697 bp

Cytosine Count

1146528 bp

Genome Length

3767924 bp

Protein-coding Genes

3458 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinate dehydrogenase flavoprotein subunitBTW10_12050Not AvailablePositive2522205 - 252397764144.0
succinate dehydrogenase iron-sulfur subunitBTW10_12055Not AvailablePositive2523991 - 252470126751.3
2-oxoglutarate dehydrogenase e1 componentBTW10_12060Not AvailablePositive2524936 - 2527770106206.0
dihydrolipoamide succinyltransferaseBTW10_12065Not AvailablePositive2527812 - 252943157140.3
dihydrolipoyl dehydrogenaseBTW10_12070Not AvailablePositive2529490 - 253092950605.6
succinate--coa ligase subunit betaBTW10_12075Not AvailablePositive2531069 - 253223541258.4
succinate--coa ligase subunit alphaBTW10_12080Not AvailablePositive2532235 - 253310729873.1
hypothetical proteinBTW10_12085Not AvailableNegative2533249 - 253424136098.1
duf2334 domain-containing proteinBTW10_12090Not AvailableNegative2534238 - 253501430324.0
glycoside hydrolaseBTW10_12095Not AvailableNegative2535007 - 253612541205.7

Displaying genes 2351 – 2360 of 3553 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.