Salinicola socius strain SMB35

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Halomonadaceae

Genus

Salinicola

Description

Salinicola socius strain SMB35 is characterized by having a single replicon, which indicates a simplified genomic structure. The genome of this strain is cataloged under the accession number MSDO00000000.1, providing a reference point for researchers interested in its genetic attributes. This strain belongs to the genus Salinicola, known for its association with saline environments. The adaptation of Salinicola socius to such conditions suggests a specialized metabolic capability, enabling it to thrive in high-salinity habitats. Understanding the genetic makeup of SMB35 may reveal insights into the mechanisms of osmoregulation and salt tolerance, which are critical for survival in extreme environments. The presence of a single replicon can also imply streamlined genetic processes and potential efficiencies in replication and gene expression. This trait may contribute to the ecological success of Salinicola socius in competitive environments where resources are limited. In summary, Salinicola socius strain SMB35’s single replicon and its genetic reference in the database highlight its potential for research into microbial adaptations to saline ecosystems, offering opportunities to explore the biological implications of these adaptations in extreme habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyHalomonadaceae
GenusSalinicola
SpeciesSalinicola socius
Strainstrain SMB35

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Salinicola socius strain SMB35 contig172, whole genome shotgun

Gene Summary

Adenine Count

790261 bp

Thymine Count

786508 bp

Guanine Count

1295315 bp

Cytosine Count

1302040 bp

Genome Length

4174124 bp

Protein-coding Genes

3619 genes

Non-Coding Genes

208 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-tyrosyl-trna(tyr) deacylaseBTW07_02010Not AvailableNegative433412 - 43384915670.8
ectoine/hydroxyectoine abc transporter substrate-binding protein ehubBTW07_02015Not AvailablePositive434335 - 43521931396.4
ectoine/hydroxyectoine abc transporter permease subunit ehucBTW07_02020Not AvailablePositive435360 - 43603124608.5
ectoine/hydroxyectoine abc transporter permease subunit ehudBTW07_02025Not AvailablePositive436035 - 43672725082.5
ectoine/hydroxyectoine abc transporter atp-binding protein ehuaBTW07_02030Not AvailablePositive436724 - 43752129884.1
cation transporterBTW07_02035Not AvailableNegative437534 - 43877544655.5
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinaseBTW07_02040Not AvailableNegative438948 - 43977829148.3
nadh-quinone oxidoreductase subunit aBTW07_02045Not AvailablePositive440122 - 44057716220.9
nadh dehydrogenaseBTW07_02050Not AvailablePositive440724 - 44140125522.7
nadh-quinone oxidoreductase subunit c/dBTW07_02055Not AvailablePositive441486 - 44327668049.5

Displaying genes 561 – 570 of 3827 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.