Salinicola socius strain SMB35

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Halomonadaceae

Genus

Salinicola

Description

Salinicola socius strain SMB35 is characterized by having a single replicon, which indicates a simplified genomic structure. The genome of this strain is cataloged under the accession number MSDO00000000.1, providing a reference point for researchers interested in its genetic attributes. This strain belongs to the genus Salinicola, known for its association with saline environments. The adaptation of Salinicola socius to such conditions suggests a specialized metabolic capability, enabling it to thrive in high-salinity habitats. Understanding the genetic makeup of SMB35 may reveal insights into the mechanisms of osmoregulation and salt tolerance, which are critical for survival in extreme environments. The presence of a single replicon can also imply streamlined genetic processes and potential efficiencies in replication and gene expression. This trait may contribute to the ecological success of Salinicola socius in competitive environments where resources are limited. In summary, Salinicola socius strain SMB35’s single replicon and its genetic reference in the database highlight its potential for research into microbial adaptations to saline ecosystems, offering opportunities to explore the biological implications of these adaptations in extreme habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyHalomonadaceae
GenusSalinicola
SpeciesSalinicola socius
Strainstrain SMB35

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Salinicola socius strain SMB35 contig172, whole genome shotgun

Gene Summary

Adenine Count

790261 bp

Thymine Count

786508 bp

Guanine Count

1295315 bp

Cytosine Count

1302040 bp

Genome Length

4174124 bp

Protein-coding Genes

3619 genes

Non-Coding Genes

208 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-formamidopyrimidine glycosylaseBTW07_00550Not AvailableNegative126547 - 12736230143.6
50s ribosomal protein l33BTW07_00555Not AvailableNegative127533 - 1276885980.34
50s ribosomal protein l28BTW07_00560Not AvailableNegative127700 - 1279369045.13
hypothetical proteinBTW07_00565Not AvailableNegative128452 - 12912624951.9
gntr family transcriptional regulatorBTW07_00570Not AvailablePositive129300 - 13000426706.5
bifunctional d-altronate/d-mannonate dehydrataseBTW07_00575Not AvailablePositive130034 - 13124545476.2
zn-dependent oxidoreductaseBTW07_00580Not AvailablePositive131348 - 13237035761.6
c4-dicarboxylate abc transporterBTW07_00585Not AvailablePositive132470 - 13345336474.4
c4-dicarboxylate abc transporter permeaseBTW07_00590Not AvailablePositive133511 - 13410421901.2
c4-dicarboxylate abc transporter permeaseBTW07_00595Not AvailablePositive134104 - 13538444640.3

Displaying genes 271 – 280 of 3827 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.