Pseudomonas chlororaphis strain PCL1601 cnt25

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis strain PCL1601 cnt25 is a Gram-negative, rod-shaped bacterium primarily found in the habitat of root nodules and rhizospheres of Chamaecytisus albus. This strain possesses a single replicon and is associated with the plant species Brassica napus var. napus within the Viridiplantae kingdom. Notably, PCL1601 cnt25 exhibits pathogenicity towards animals, indicating a potential relationship with its host organisms that may extend beyond plant interactions. This characteristic suggests that while it thrives in plant-associated environments, it may also have implications for animal health or ecology, potentially influencing plant-animal interactions. The strain's accessions are cataloged under MSCT00000000.1, providing a reference for further genetic and functional studies. The presence of Pseudomonas chlororaphis in the rhizosphere and root nodules emphasizes its role in the soil microbiome, likely contributing to nutrient cycling or plant health. Understanding the ecological role of Pseudomonas chlororaphis strain PCL1601 cnt25 can provide insights into its contributions to plant health and its interactions within complex ecosystems. The dual pathogenicity towards both plants and animals underscores the importance of studying microbial traits to elucidate the dynamics of host-microbe interactions and their broader ecological implications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
Strainstrain PCL1601 cnt25

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis strain PCL1601 cnt25
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatnodules of Chamaecytisus albus; rhizosphere; root nodules
Biotic relationshipNot Available
Host(s)Viridiplantae, Brassica napus var. napus, Persea americana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Pseudomonas chlororaphis strain PCL1601 cnt25, whole genome

Gene Summary

Adenine Count

1227924 bp

Thymine Count

1230209 bp

Guanine Count

2152125 bp

Cytosine Count

2145186 bp

Genome Length

6755444 bp

Protein-coding Genes

5756 genes

Non-Coding Genes

245 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ubiquinone-binding proteinBTN82_03570Not AvailablePositive803675 - 80410915965.2
rnfh family proteinBTN82_03575Not AvailablePositive804102 - 80442211400.8
hypothetical proteinBTN82_03580Not AvailableNegative804481 - 80500819203.8
ferric iron uptake transcriptional regulatorBTN82_03585Not AvailablePositive805107 - 80551115101.1
dna repair protein recnBTN82_03590Not AvailableNegative805600 - 80727361088.5
nucleotide exchange factor grpeBTN82_03595Not AvailablePositive807528 - 80809420815.6
molecular chaperone dnakBTN82_03600Not AvailablePositive808197 - 81011368561.5
molecular chaperone dnajBTN82_03605Not AvailablePositive810437 - 81156140116.2
4-hydroxy-tetrahydrodipicolinate reductaseBTN82_03610Not AvailablePositive811572 - 81237828444.6
carbamoyl phosphate synthase small subunitBTN82_03615Not AvailablePositive812637 - 81377340661.4

Displaying genes 871 – 880 of 6001 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.