Pseudomonas chlororaphis strain PCL1601 cnt25

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis strain PCL1601 cnt25 is a Gram-negative, rod-shaped bacterium primarily found in the habitat of root nodules and rhizospheres of Chamaecytisus albus. This strain possesses a single replicon and is associated with the plant species Brassica napus var. napus within the Viridiplantae kingdom. Notably, PCL1601 cnt25 exhibits pathogenicity towards animals, indicating a potential relationship with its host organisms that may extend beyond plant interactions. This characteristic suggests that while it thrives in plant-associated environments, it may also have implications for animal health or ecology, potentially influencing plant-animal interactions. The strain's accessions are cataloged under MSCT00000000.1, providing a reference for further genetic and functional studies. The presence of Pseudomonas chlororaphis in the rhizosphere and root nodules emphasizes its role in the soil microbiome, likely contributing to nutrient cycling or plant health. Understanding the ecological role of Pseudomonas chlororaphis strain PCL1601 cnt25 can provide insights into its contributions to plant health and its interactions within complex ecosystems. The dual pathogenicity towards both plants and animals underscores the importance of studying microbial traits to elucidate the dynamics of host-microbe interactions and their broader ecological implications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
Strainstrain PCL1601 cnt25

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis strain PCL1601 cnt25
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatnodules of Chamaecytisus albus; rhizosphere; root nodules
Biotic relationshipNot Available
Host(s)Viridiplantae, Brassica napus var. napus, Persea americana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Pseudomonas chlororaphis strain PCL1601 cnt25, whole genome

Gene Summary

Adenine Count

1227924 bp

Thymine Count

1230209 bp

Guanine Count

2152125 bp

Cytosine Count

2145186 bp

Genome Length

6755444 bp

Protein-coding Genes

5756 genes

Non-Coding Genes

245 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amp nucleosidaseBTN82_25865Not AvailableNegative5757425 - 575888854404.2
dna alkylation response proteinBTN82_25870Not AvailableNegative5759000 - 576064959675.4
hybrid sensor histidine kinase/response regulatorBTN82_25875Not AvailableNegative5760725 - 576310987595.8
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinaseBTN82_25880Not AvailablePositive5763402 - 576419928320.9
thiamine-phosphate diphosphorylaseBTN82_25885Not AvailablePositive5764217 - 576483421823.2
glutamate-1-semialdehyde-2,1-aminomutaseBTN82_25890Not AvailablePositive5764859 - 576614245125.3
hypothetical proteinBTN82_25895Not AvailablePositive5766357 - 576691119946.7
hypothetical proteinBTN82_25900Not AvailableNegative5766963 - 576728912487.2
trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miabBTN82_25905Not AvailablePositive5767424 - 576875249501.0
phoh family proteinBTN82_25910Not AvailablePositive5768931 - 576995038205.2

Displaying genes 5081 – 5090 of 6001 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.