Pseudomonas chlororaphis strain PCL1601 cnt25

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis strain PCL1601 cnt25 is a Gram-negative, rod-shaped bacterium primarily found in the habitat of root nodules and rhizospheres of Chamaecytisus albus. This strain possesses a single replicon and is associated with the plant species Brassica napus var. napus within the Viridiplantae kingdom. Notably, PCL1601 cnt25 exhibits pathogenicity towards animals, indicating a potential relationship with its host organisms that may extend beyond plant interactions. This characteristic suggests that while it thrives in plant-associated environments, it may also have implications for animal health or ecology, potentially influencing plant-animal interactions. The strain's accessions are cataloged under MSCT00000000.1, providing a reference for further genetic and functional studies. The presence of Pseudomonas chlororaphis in the rhizosphere and root nodules emphasizes its role in the soil microbiome, likely contributing to nutrient cycling or plant health. Understanding the ecological role of Pseudomonas chlororaphis strain PCL1601 cnt25 can provide insights into its contributions to plant health and its interactions within complex ecosystems. The dual pathogenicity towards both plants and animals underscores the importance of studying microbial traits to elucidate the dynamics of host-microbe interactions and their broader ecological implications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
Strainstrain PCL1601 cnt25

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis strain PCL1601 cnt25
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatnodules of Chamaecytisus albus; rhizosphere; root nodules
Biotic relationshipNot Available
Host(s)Viridiplantae, Brassica napus var. napus, Persea americana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Pseudomonas chlororaphis strain PCL1601 cnt25, whole genome

Gene Summary

Adenine Count

1227924 bp

Thymine Count

1230209 bp

Guanine Count

2152125 bp

Cytosine Count

2145186 bp

Genome Length

6755444 bp

Protein-coding Genes

5756 genes

Non-Coding Genes

245 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
adenylate cyclaseBTN82_19995Not AvailableNegative4511495 - 451259539854.6
hypothetical proteinBTN82_20000Not AvailableNegative4512824 - 451481873185.1
esce/ysce/ssae family type iii secretion system needle protein co-chaperoneBTN82_20005Not AvailableNegative4515175 - 45154239388.37
escd/yscd/hrpq family type iii secretion system inner membrane ring proteinBTN82_20010Not AvailableNegative4515450 - 451666743709.8
escc/yscc/hrcc family type iii secretion system outer membrane ring proteinBTN82_20015Not AvailableNegative4516678 - 451816854302.4
hypothetical proteinBTN82_20020Not AvailableNegative4518165 - 451844610491.5
dna-binding response regulatorBTN82_20025Not AvailablePositive4518682 - 451933223668.2
hybrid sensor histidine kinase/response regulatorBTN82_20030Not AvailableNegative4519348 - 4522104102152.0
type iii secretion chaperone sycnBTN82_20035Not AvailablePositive4522331 - 452269913879.0
escv/yscv/hrcv family type iii secretion system export apparatus proteinBTN82_20040Not AvailablePositive4522696 - 452475074669.0

Displaying genes 3931 – 3940 of 6001 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.