Agrobacterium pusense strain NRCPB10

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium pusense strain NRCPB10 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain possesses flagella, which indicates its motility capabilities. A notable feature of Agrobacterium pusense NRCPB10 is that it contains a single replicon, suggesting a streamlined genetic organization that may influence its adaptability and function within various environments. The strain is documented under the accession number MRDJ00000000.1, which provides a reference point for genetic studies and further research. The presence of a single replicon can also be indicative of its evolutionary strategy, potentially allowing for efficient replication and stability of genetic material. Ecologically, Agrobacterium species are known for their role in plant interactions, particularly in the context of plant-pathogen dynamics. While specific ecological roles of NRCPB10 are not detailed, the traits of motility and Gram-negative status suggest potential interactions with plant systems, possibly involving environmental colonization or symbiotic relationships. The characteristics of Agrobacterium pusense strain NRCPB10 may contribute to its effectiveness in biotechnological applications, especially in agriculture, where it could be utilized for genetic engineering or biocontrol purposes. Overall, understanding the traits of this strain can provide insights into its ecological roles and potential uses in microbial biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium pusense
Strainstrain NRCPB10

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium pusense strain NRCPB10
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdesert soil; rhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens, Oryza sativa, Cicer arietinum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium pusense strain NRCPB10 scaffold17, whole genome

Gene Summary

Adenine Count

1070181 bp

Thymine Count

1078341 bp

Guanine Count

1562744 bp

Cytosine Count

1559995 bp

Genome Length

5271321 bp

Protein-coding Genes

4837 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Putative tail tape measure proteinBTE56_12970Not AvailablePositive2639670 - 264025119110.8
Tail proteinBTE56_12975Not AvailablePositive2640365 - 264100323156.6
Minor tail proteinBTE56_12980Not AvailablePositive2641000 - 264188430733.6
Phage cell wall peptidaseBTE56_12985Not AvailablePositive2641881 - 264231516061.3
Tail proteinBTE56_12990Not AvailablePositive2642333 - 2646136136521.0
hypothetical proteinBTE56_12995Not AvailablePositive2646167 - 26463737148.79
hypothetical proteinBTE56_13000Not AvailablePositive2646514 - 26467688599.47
Hybrid sensor histidine kinase - response regulatorBTE56_13005Not AvailablePositive2646861 - 264753224807.7
AttlNot AvailableNot AvailablePositive3759135 - 3759184Not Available
IntegraseBTE56_18195Not AvailablePositive3759353 - 376061846121.7

Displaying genes 81 – 90 of 4998 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.