Agrobacterium pusense strain NRCPB10

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium pusense strain NRCPB10 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain possesses flagella, which indicates its motility capabilities. A notable feature of Agrobacterium pusense NRCPB10 is that it contains a single replicon, suggesting a streamlined genetic organization that may influence its adaptability and function within various environments. The strain is documented under the accession number MRDJ00000000.1, which provides a reference point for genetic studies and further research. The presence of a single replicon can also be indicative of its evolutionary strategy, potentially allowing for efficient replication and stability of genetic material. Ecologically, Agrobacterium species are known for their role in plant interactions, particularly in the context of plant-pathogen dynamics. While specific ecological roles of NRCPB10 are not detailed, the traits of motility and Gram-negative status suggest potential interactions with plant systems, possibly involving environmental colonization or symbiotic relationships. The characteristics of Agrobacterium pusense strain NRCPB10 may contribute to its effectiveness in biotechnological applications, especially in agriculture, where it could be utilized for genetic engineering or biocontrol purposes. Overall, understanding the traits of this strain can provide insights into its ecological roles and potential uses in microbial biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium pusense
Strainstrain NRCPB10

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium pusense strain NRCPB10
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdesert soil; rhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens, Oryza sativa, Cicer arietinum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium pusense strain NRCPB10 scaffold17, whole genome

Gene Summary

Adenine Count

1070181 bp

Thymine Count

1078341 bp

Guanine Count

1562744 bp

Cytosine Count

1559995 bp

Genome Length

5271321 bp

Protein-coding Genes

4837 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
proteaseBTE56_00055Not AvailableNegative13235 - 1380119836.8
amidaseBTE56_00060Not AvailableNegative13899 - 1529350151.8
peptide abc transporter permeaseBTE56_00065Not AvailableNegative15347 - 1616828895.5
peptide abc transporterBTE56_00070Not AvailableNegative16165 - 1711533626.4
abc transporter substrate-binding proteinBTE56_00075Not AvailableNegative17310 - 1884555755.4
lysr family transcriptional regulatorBTE56_00080Not AvailableNegative19057 - 1995932539.6
abc transporter atp-binding proteinBTE56_00085Not AvailableNegative20215 - 2096427530.0
peptide abc transporter atp-binding proteinBTE56_00090Not AvailableNegative20961 - 2179730855.1
d-ala-d-ala transporter subunitBTE56_00095Not AvailableNegative21794 - 2272633321.7
peptide abc transporter permeaseBTE56_00100Not AvailableNegative22723 - 2379039319.7

Displaying genes 171 – 180 of 4998 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.