Rubritalea profundi strain SAORIC-165

rod

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Verrucomicrobiia

Order

Verrucomicrobiales

Family

Rubritaleaceae

Genus

Rubritalea

Description

Rubritalea profundi strain SAORIC-165 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. The organism is documented under the accession number MQWA00000000.1, which provides a reference for its genetic information. The Gram-negative classification indicates that Rubritalea profundi strain SAORIC-165 possesses a thin peptidoglycan layer surrounded by an outer membrane, which is a typical feature of many bacteria in this category. This structural characteristic may influence its interaction with the environment, including its susceptibility to antibiotics and its role in various ecological niches. The rod shape of the bacterium can be indicative of its motility and growth patterns, as bacteria with this morphology often exhibit specific modes of movement and nutrient absorption. The single replicon suggests a streamlined genomic organization, which can be advantageous for efficient replication and adaptation in various environments. In an ecological context, the traits of Rubritalea profundi strain SAORIC-165 may influence its ecological roles, such as nutrient cycling or interactions with other microorganisms. As a member of its genus, it may contribute to the degradation of organic materials or the maintenance of microbial diversity in its habitat. Overall, understanding the specific traits of this strain can provide insights into its functional roles within microbial communities and its potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassVerrucomicrobiia
OrderVerrucomicrobiales
FamilyRubritaleaceae
GenusRubritalea
SpeciesRubritalea profundi
Strainstrain SAORIC-165

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rubritalea profundi strain SAORIC-165 scaffold00004, whole genome

Gene Summary

Adenine Count

1013806 bp

Thymine Count

1011616 bp

Guanine Count

993274 bp

Cytosine Count

986557 bp

Genome Length

4167407 bp

Protein-coding Genes

3391 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf5069 domain-containing proteinBSZ32_07520Not AvailableNegative1715836 - 171627315828.9
transcriptional regulatorBSZ32_07525Not AvailableNegative1716354 - 171665611704.1
dna-3-methyladenine glycosylaseBSZ32_07530Not AvailablePositive1716966 - 171753221960.5
hypothetical proteinBSZ32_07535Not AvailablePositive1717544 - 171804118361.7
hypothetical proteinBSZ32_07540Not AvailablePositive1718301 - 171893622887.0
dihydrouridine synthaseBSZ32_07550Not AvailableNegative1720287 - 172133338894.7
peptide-methionine (r)-s-oxide reductaseBSZ32_07555Not AvailablePositive1721548 - 172199716528.4
riboflavin biosynthesis protein ribdBSZ32_07560Not AvailableNegative1722256 - 172330838567.1
hypothetical proteinBSZ32_07565Not AvailablePositive1723766 - 172436822242.2
fad/fmn-containing dehydrogenaseBSZ32_07570Not AvailablePositive1724473 - 172584649061.0

Displaying genes 1441 – 1450 of 3438 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.