Thioclava sp. F28-4

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Thioclava

Description

Thioclava sp. F28-4 is a Gram-negative, rod-shaped bacterium characterized by a single replicon. This classification indicates that it possesses a unique cellular structure, typical of Gram-negative bacteria, which includes a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. The organism is represented in genomic databases with the accession number MPZQ00000000.1, which facilitates its identification and further research. The single replicon suggests a streamlined genetic organization, potentially impacting its metabolic capabilities and adaptability within various environments. In terms of ecological insight, the Gram-negative nature of Thioclava sp. F28-4 may contribute to its ability to thrive in diverse habitats, particularly in aquatic environments where such organisms are prevalent. The presence of an outer membrane can provide protection against environmental stresses, including antibiotics and phages, thus influencing its survival and ecological interactions. These traits underscore the importance of studying Thioclava sp. F28-4 in understanding the roles of Gram-negative bacteria in their ecosystems, particularly in biogeochemical cycles and microbial community dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusThioclava
SpeciesThioclava sp. F28-4
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thioclava sp. F28-4 contig70, whole genome shotgun sequence.

Gene Summary

Adenine Count

839803 bp

Thymine Count

828712 bp

Guanine Count

1439428 bp

Cytosine Count

1472225 bp

Genome Length

4580168 bp

Protein-coding Genes

4252 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter substrate-binding proteinBMI87_19640Not AvailablePositive4098730 - 409982740007.9
small integral membrane transport proteinBMI87_19645Not AvailablePositive4099920 - 410124249928.5
trap dicarboxylate transporter subunit dctmBMI87_19650Not AvailablePositive4101246 - 410260148137.6
anti-anti-sigma factorBMI87_19655Not AvailablePositive4102882 - 410375731973.6
udp-glucose 6-dehydrogenaseBMI87_19660Not AvailablePositive4103759 - 410411212593.4
hypothetical proteinBMI87_19665Not AvailablePositive4104150 - 410452413030.8
hypothetical proteinBMI87_19670Not AvailablePositive4104521 - 410553135729.8
hypothetical proteinBMI87_19675Not AvailablePositive4105528 - 410666440500.2
Trna-serNot AvailableNot AvailablePositive4106825 - 4106914Not Available
3-hydroxyacyl-coa dehydrogenaseBMI87_19685Not AvailableNegative4107024 - 410777025427.4

Displaying genes 3881 – 3890 of 4316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.