Thioclava sp. F28-4

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Thioclava

Description

Thioclava sp. F28-4 is a Gram-negative, rod-shaped bacterium characterized by a single replicon. This classification indicates that it possesses a unique cellular structure, typical of Gram-negative bacteria, which includes a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. The organism is represented in genomic databases with the accession number MPZQ00000000.1, which facilitates its identification and further research. The single replicon suggests a streamlined genetic organization, potentially impacting its metabolic capabilities and adaptability within various environments. In terms of ecological insight, the Gram-negative nature of Thioclava sp. F28-4 may contribute to its ability to thrive in diverse habitats, particularly in aquatic environments where such organisms are prevalent. The presence of an outer membrane can provide protection against environmental stresses, including antibiotics and phages, thus influencing its survival and ecological interactions. These traits underscore the importance of studying Thioclava sp. F28-4 in understanding the roles of Gram-negative bacteria in their ecosystems, particularly in biogeochemical cycles and microbial community dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusThioclava
SpeciesThioclava sp. F28-4
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thioclava sp. F28-4 contig70, whole genome shotgun sequence.

Gene Summary

Adenine Count

839803 bp

Thymine Count

828712 bp

Guanine Count

1439428 bp

Cytosine Count

1472225 bp

Genome Length

4580168 bp

Protein-coding Genes

4252 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transposaseBMI87_16140Not AvailablePositive3389615 - 339118058409.3
hypothetical proteinBMI87_16145Not AvailableNegative3391271 - 339165714162.7
hypothetical proteinBMI87_16150Not AvailableNegative3391782 - 339307148936.0
dtdp-glucose 4,6-dehydrataseBMI87_16155Not AvailableNegative3393300 - 339397024377.7
dtdp-4-dehydrorhamnose 3,5-epimeraseBMI87_16160Not AvailableNegative3393967 - 339453920838.3
Trna-proNot AvailableNot AvailablePositive3394639 - 3394715Not Available
eama family transporterBMI87_16170Not AvailableNegative3394768 - 339574534818.6
3-isopropylmalate dehydrogenaseBMI87_16175Not AvailableNegative3395862 - 339696539647.6
hypothetical proteinBMI87_16180Not AvailablePositive3397182 - 339810234327.1
hypothetical proteinBMI87_16185Not AvailableNegative3398066 - 339910336856.5

Displaying genes 3201 – 3210 of 4316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.