Pectobacterium actinidiae strain ICMP 19972

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium actinidiae strain ICMP 19972 is a Gram-negative bacterium that possesses flagella, indicating motility. This strain is characterized by having a single replicon, which suggests a streamlined genomic organization. The genomic information for this strain is recorded under the accession number MPUJ00000000.1. As a member of the Pectobacterium genus, this strain is known to be associated with plant pathogenesis, particularly affecting kiwifruit. The motility conferred by its flagella likely plays a role in its ability to colonize plant tissues and establish infections. The specific traits of Pectobacterium actinidiae, including its single replicon, may contribute to its adaptability and efficiency in pathogenic behavior. Ecologically, Pectobacterium actinidiae strain ICMP 19972 serves as an important model for studying plant-bacterial interactions, particularly in the context of agricultural health and crop management. Understanding the genetics, motility, and pathogenic mechanisms of this bacterium can provide insights into controlling its spread and mitigating its impact on kiwifruit production.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium actinidiae
Strainstrain ICMP 19972

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium actinidiae strain ICMP 19972 Scaffold49, whole

Gene Summary

Adenine Count

1194415 bp

Thymine Count

1171781 bp

Guanine Count

1240134 bp

Cytosine Count

1276017 bp

Genome Length

4886946 bp

Protein-coding Genes

4080 genes

Non-Coding Genes

135 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxal phosphataseBSK71_04325Not AvailableNegative993560 - 99438130223.0
Trna-serNot AvailableNot AvailablePositive994655 - 994742Not Available
duf4186 domain-containing proteinBSK71_04335Not AvailableNegative994843 - 99520513916.6
6-phosphogluconolactonaseBSK71_04340Not AvailablePositive995449 - 99644736053.3
hypothetical proteinBSK71_04345Not AvailableNegative996503 - 99775345954.0
sugar abc transporter substrate-binding proteinBSK71_04350Not AvailableNegative997768 - 99884438376.9
formate dehydrogenase subunit gammaBSK71_04355Not AvailableNegative999300 - 99993524657.4
formate dehydrogenase subunit betaBSK71_04360Not AvailableNegative999928 - 100083633369.6
formate dehydrogenase-n subunit alphaBSK71_04365Not AvailableNegative1000849 - 100326089877.5
methionine--trna ligaseBSK71_04370Not AvailableNegative1004177 - 100620775811.4

Displaying genes 921 – 930 of 4215 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.