Pectobacterium actinidiae strain ICMP 19972

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium actinidiae strain ICMP 19972 is a Gram-negative bacterium that possesses flagella, indicating motility. This strain is characterized by having a single replicon, which suggests a streamlined genomic organization. The genomic information for this strain is recorded under the accession number MPUJ00000000.1. As a member of the Pectobacterium genus, this strain is known to be associated with plant pathogenesis, particularly affecting kiwifruit. The motility conferred by its flagella likely plays a role in its ability to colonize plant tissues and establish infections. The specific traits of Pectobacterium actinidiae, including its single replicon, may contribute to its adaptability and efficiency in pathogenic behavior. Ecologically, Pectobacterium actinidiae strain ICMP 19972 serves as an important model for studying plant-bacterial interactions, particularly in the context of agricultural health and crop management. Understanding the genetics, motility, and pathogenic mechanisms of this bacterium can provide insights into controlling its spread and mitigating its impact on kiwifruit production.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium actinidiae
Strainstrain ICMP 19972

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium actinidiae strain ICMP 19972 Scaffold49, whole

Gene Summary

Adenine Count

1194415 bp

Thymine Count

1171781 bp

Guanine Count

1240134 bp

Cytosine Count

1276017 bp

Genome Length

4886946 bp

Protein-coding Genes

4080 genes

Non-Coding Genes

135 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane protein assembly factor bamdBSK71_19395Not AvailablePositive4466982 - 446771627354.5
ribosomal subunit interface proteinBSK71_19400Not AvailablePositive4468038 - 446837612550.0
chorismate mutaseBSK71_19405Not AvailablePositive4468726 - 446988643256.9
bifunctional chorismate mutase/prephenate dehydrogenaseBSK71_19410Not AvailableNegative4469968 - 447108942420.6
3-deoxy-7-phosphoheptulonate synthaseBSK71_19415Not AvailableNegative4471096 - 447216939157.6
two-component system response regulator yehtBSK71_19420Not AvailablePositive4472420 - 447313627118.2
hypothetical proteinBSK71_19425Not AvailablePositive4473183 - 447353012809.8
sam-dependent methyltransferaseBSK71_19430Not AvailablePositive4473793 - 447473135136.9
50s ribosomal protein l19BSK71_19435Not AvailableNegative4475089 - 447543613105.0
trna (guanosine(37)-n1)-methyltransferase trmdBSK71_19440Not AvailableNegative4475500 - 447625528362.0

Displaying genes 3841 – 3850 of 4215 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.