Pectobacterium actinidiae strain ICMP 19972

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium actinidiae strain ICMP 19972 is a Gram-negative bacterium that possesses flagella, indicating motility. This strain is characterized by having a single replicon, which suggests a streamlined genomic organization. The genomic information for this strain is recorded under the accession number MPUJ00000000.1. As a member of the Pectobacterium genus, this strain is known to be associated with plant pathogenesis, particularly affecting kiwifruit. The motility conferred by its flagella likely plays a role in its ability to colonize plant tissues and establish infections. The specific traits of Pectobacterium actinidiae, including its single replicon, may contribute to its adaptability and efficiency in pathogenic behavior. Ecologically, Pectobacterium actinidiae strain ICMP 19972 serves as an important model for studying plant-bacterial interactions, particularly in the context of agricultural health and crop management. Understanding the genetics, motility, and pathogenic mechanisms of this bacterium can provide insights into controlling its spread and mitigating its impact on kiwifruit production.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium actinidiae
Strainstrain ICMP 19972

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium actinidiae strain ICMP 19972 Scaffold49, whole

Gene Summary

Adenine Count

1194415 bp

Thymine Count

1171781 bp

Guanine Count

1240134 bp

Cytosine Count

1276017 bp

Genome Length

4886946 bp

Protein-coding Genes

4080 genes

Non-Coding Genes

135 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
oligopeptide abc transporter substrate-binding protein oppaBSK71_13150Not AvailableNegative3026398 - 302806863166.6
bifunctional acetaldehyde-coa/alcohol dehydrogenaseBSK71_13155Not AvailablePositive3029077 - 303175296673.2
thymidine kinaseBSK71_13160Not AvailableNegative3031906 - 303250222142.5
transcriptional regulatorBSK71_13165Not AvailablePositive3032896 - 303330315362.3
utp--glucose-1-phosphate uridylyltransferaseBSK71_13170Not AvailableNegative3033452 - 303436333191.4
two-component system response regulator rssbBSK71_13175Not AvailableNegative3034570 - 303558637533.8
patatin family proteinBSK71_13180Not AvailableNegative3035704 - 303660933145.2
hypothetical proteinBSK71_13185Not AvailablePositive3036742 - 303720917773.9
formyltetrahydrofolate deformylaseBSK71_13190Not AvailablePositive3037293 - 303814132155.9
Trna-tyrNot AvailableNot AvailablePositive3038296 - 3038380Not Available

Displaying genes 2611 – 2620 of 4215 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.