Pectobacterium actinidiae strain ICMP 19972

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium actinidiae strain ICMP 19972 is a Gram-negative bacterium that possesses flagella, indicating motility. This strain is characterized by having a single replicon, which suggests a streamlined genomic organization. The genomic information for this strain is recorded under the accession number MPUJ00000000.1. As a member of the Pectobacterium genus, this strain is known to be associated with plant pathogenesis, particularly affecting kiwifruit. The motility conferred by its flagella likely plays a role in its ability to colonize plant tissues and establish infections. The specific traits of Pectobacterium actinidiae, including its single replicon, may contribute to its adaptability and efficiency in pathogenic behavior. Ecologically, Pectobacterium actinidiae strain ICMP 19972 serves as an important model for studying plant-bacterial interactions, particularly in the context of agricultural health and crop management. Understanding the genetics, motility, and pathogenic mechanisms of this bacterium can provide insights into controlling its spread and mitigating its impact on kiwifruit production.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium actinidiae
Strainstrain ICMP 19972

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium actinidiae strain ICMP 19972 Scaffold49, whole

Gene Summary

Adenine Count

1194415 bp

Thymine Count

1171781 bp

Guanine Count

1240134 bp

Cytosine Count

1276017 bp

Genome Length

4886946 bp

Protein-coding Genes

4080 genes

Non-Coding Genes

135 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
asparagine--trna ligaseBSK71_08665Not AvailableNegative1976205 - 197759051985.3
nicotinate phosphoribosyltransferaseBSK71_08670Not AvailableNegative1977908 - 197911346054.1
aminopeptidase nBSK71_08675Not AvailablePositive1979337 - 198195299014.4
dihydroorotate dehydrogenase (quinone)BSK71_08680Not AvailablePositive1982321 - 198333136888.9
cell division protein zapcBSK71_08685Not AvailablePositive1983533 - 198412021933.4
hypothetical proteinBSK71_08690Not AvailableNegative1984168 - 198527140472.6
23s rrna (guanine(2445)-n(2))/(guanine(2069)-n(7))- methyltransferaseBSK71_08695Not AvailablePositive1985382 - 198749979031.4
abc transporter atp-binding proteinBSK71_08700Not AvailablePositive1987503 - 198943172073.8
paraquat-inducible protein aBSK71_08705Not AvailablePositive1989673 - 199091745838.2
paraquat-inducible protein bBSK71_08710Not AvailablePositive1990904 - 199254460664.9

Displaying genes 1721 – 1730 of 4215 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.