Pectobacterium actinidiae strain ICMP 19972

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium actinidiae strain ICMP 19972 is a Gram-negative bacterium that possesses flagella, indicating motility. This strain is characterized by having a single replicon, which suggests a streamlined genomic organization. The genomic information for this strain is recorded under the accession number MPUJ00000000.1. As a member of the Pectobacterium genus, this strain is known to be associated with plant pathogenesis, particularly affecting kiwifruit. The motility conferred by its flagella likely plays a role in its ability to colonize plant tissues and establish infections. The specific traits of Pectobacterium actinidiae, including its single replicon, may contribute to its adaptability and efficiency in pathogenic behavior. Ecologically, Pectobacterium actinidiae strain ICMP 19972 serves as an important model for studying plant-bacterial interactions, particularly in the context of agricultural health and crop management. Understanding the genetics, motility, and pathogenic mechanisms of this bacterium can provide insights into controlling its spread and mitigating its impact on kiwifruit production.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium actinidiae
Strainstrain ICMP 19972

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium actinidiae strain ICMP 19972 Scaffold49, whole

Gene Summary

Adenine Count

1194415 bp

Thymine Count

1171781 bp

Guanine Count

1240134 bp

Cytosine Count

1276017 bp

Genome Length

4886946 bp

Protein-coding Genes

4080 genes

Non-Coding Genes

135 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
proteolipid membrane potential modulatorBSK71_07155Not AvailablePositive1648484 - 16486515965.66
2-oxoglutarate translocatorBSK71_07160Not AvailableNegative1648743 - 165016450611.3
3-carboxy-cis,cis-muconate cycloisomeraseBSK71_07165Not AvailableNegative1650311 - 165166048830.3
gntr family transcriptional regulatorBSK71_07170Not AvailablePositive1651887 - 165262727551.0
diguanylate cyclaseBSK71_07175Not AvailableNegative1652716 - 165418856790.8
lipid kinaseBSK71_07180Not AvailablePositive1654463 - 165537732867.3
nitroreductaseBSK71_07185Not AvailableNegative1655448 - 165604722242.3
molybdopterin-synthase adenylyltransferase moebBSK71_07190Not AvailableNegative1656154 - 165690627386.4
molybdopterin molybdotransferaseBSK71_07195Not AvailableNegative1656909 - 165814444100.9
glutathione abc transporter atp-binding protein gsiaBSK71_07200Not AvailablePositive1658727 - 166062870716.2

Displaying genes 1471 – 1480 of 4215 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.