Pseudomonas koreensis strain CI12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas koreensis strain CI12 is a Gram-negative bacterium primarily isolated from Korean agricultural soil, specifically within the rice rhizosphere. This strain possesses a single replicon, which is characteristic of many bacteria in the Pseudomonas genus. P. koreensis has been identified as a host for Homo sapiens, indicating its potential to interact with human biology. One notable health effect associated with Pseudomonas koreensis strain CI12 is its involvement in infectious keratitis, a serious eye condition that can lead to vision impairment. This highlights the strain's pathogenic potential, emphasizing the importance of understanding its ecological and health-related implications. The accession number MPLD00000000.1 serves as a reference for further genomic studies and provides a pathway for researchers to explore the genetic characteristics of this strain. The association with agricultural soil and rice rhizosphere suggests that P. koreensis may play a role in soil health and plant interactions, potentially influencing agricultural practices and crop productivity. In summary, Pseudomonas koreensis strain CI12 is a significant microbial entity with both agricultural relevance and health implications for humans. Its presence in rice rhizospheres indicates a potential ecological role, while its association with infectious keratitis underscores the need for further investigation into its pathogenic mechanisms and interactions with hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas koreensis
Strainstrain CI12

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas koreensis strain CI12
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKorean agricultural soil; rice rhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas koreensis strain CI12 Contig_16, whole genome shotgun

Gene Summary

Adenine Count

1354364 bp

Thymine Count

1349403 bp

Guanine Count

1956058 bp

Cytosine Count

1962203 bp

Genome Length

6622028 bp

Protein-coding Genes

5666 genes

Non-Coding Genes

179 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cell division protein ftsqBOW65_23520Not AvailableNegative5356237 - 535710332315.3
d-alanine--d-alanine ligaseBOW65_23525Not AvailableNegative5357108 - 535806733899.6
udp-n-acetylmuramate--l-alanine ligaseBOW65_23530Not AvailableNegative5358064 - 535952452593.5
undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferaseBOW65_23535Not AvailableNegative5359517 - 536058737890.1
putative lipid ii flippase ftswBOW65_23540Not AvailableNegative5360577 - 536179444344.5
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseBOW65_23545Not AvailableNegative5361791 - 536313747890.3
phospho-n-acetylmuramoyl-pentapeptide- transferaseBOW65_23550Not AvailableNegative5363143 - 536422539488.5
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseBOW65_23555Not AvailableNegative5364225 - 536559247264.5
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseBOW65_23560Not AvailableNegative5365585 - 536704851981.2
cell division proteinBOW65_23565Not AvailableNegative5367048 - 536879063064.6

Displaying genes 4681 – 4690 of 5845 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infectious keratitisCausesPMC7747071

Displaying health effects 1 – 1 of 1 in total