Pseudomonas koreensis strain CI12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas koreensis strain CI12 is a Gram-negative bacterium primarily isolated from Korean agricultural soil, specifically within the rice rhizosphere. This strain possesses a single replicon, which is characteristic of many bacteria in the Pseudomonas genus. P. koreensis has been identified as a host for Homo sapiens, indicating its potential to interact with human biology. One notable health effect associated with Pseudomonas koreensis strain CI12 is its involvement in infectious keratitis, a serious eye condition that can lead to vision impairment. This highlights the strain's pathogenic potential, emphasizing the importance of understanding its ecological and health-related implications. The accession number MPLD00000000.1 serves as a reference for further genomic studies and provides a pathway for researchers to explore the genetic characteristics of this strain. The association with agricultural soil and rice rhizosphere suggests that P. koreensis may play a role in soil health and plant interactions, potentially influencing agricultural practices and crop productivity. In summary, Pseudomonas koreensis strain CI12 is a significant microbial entity with both agricultural relevance and health implications for humans. Its presence in rice rhizospheres indicates a potential ecological role, while its association with infectious keratitis underscores the need for further investigation into its pathogenic mechanisms and interactions with hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas koreensis
Strainstrain CI12

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas koreensis strain CI12
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKorean agricultural soil; rice rhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas koreensis strain CI12 Contig_16, whole genome shotgun

Gene Summary

Adenine Count

1354364 bp

Thymine Count

1349403 bp

Guanine Count

1956058 bp

Cytosine Count

1962203 bp

Genome Length

6622028 bp

Protein-coding Genes

5666 genes

Non-Coding Genes

179 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional udp-glucuronic acid oxidase/udp-4-amino-4-deoxy-l-arabinose formyltransferaseBOW65_13510Not AvailableNegative3078839 - 308083073774.1
undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferaseBOW65_13515Not AvailableNegative3080827 - 308185237697.8
udp-4-amino-4-deoxy-l-arabinose--oxoglutarate aminotransferaseBOW65_13520Not AvailableNegative3081849 - 308299741708.1
integraseBOW65_13525Not AvailablePositive3083431 - 308432133904.7
abc transporter atp-binding proteinBOW65_13530Not AvailableNegative3084322 - 308538037395.1
iron abc transporter permeaseBOW65_13535Not AvailableNegative3085377 - 308697556480.8
iron abc transporter substrate-binding proteinBOW65_13540Not AvailableNegative3086976 - 308798935907.5
hypothetical proteinBOW65_13545Not AvailableNegative3088200 - 30884428916.26
4-amino-4-deoxy-l-arabinose lipid a transferaseBOW65_13550Not AvailableNegative3088471 - 309018663889.0
histidine phosphatase family proteinBOW65_13555Not AvailableNegative3090250 - 309090624220.2

Displaying genes 2701 – 2710 of 5845 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infectious keratitisCausesPMC7747071

Displaying health effects 1 – 1 of 1 in total