Escherichia coli strain 559

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 559 is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic and demonstrates mobility due to the presence of flagella. This strain is typically found in host-associated environments, indicating its adaptation to living within various hosts, which include Homo sapiens, Gallus gallus, Bos taurus, and numerous other vertebrates and invertebrates. With a mesophilic optimal growth temperature of 37°C, E. coli strain 559 thrives in warm-blooded hosts. This strain possesses a single replicon and a double membrane structure, characteristic of its classification within the Proteobacteria phylum. E. coli strain 559 is free-living, yet its extensive list of hosts underscores its versatility and ability to colonize different biological systems. E. coli strain 559 is associated with a wide variety of health effects, particularly in humans. It is known to cause urinary tract infections (UTIs), gastrointestinal infections, neonatal meningitis, and severe conditions such as hemolytic uremic syndrome (HUS), among others. The strain’s pathogenicity in humans can lead to significant health complications, including renal failure and gastrointestinal diseases, emphasizing its clinical relevance. The ecological insight derived from the diverse host range and pathogenic potential of E. coli strain 559 highlights its role in both environmental and clinical settings. Its ability to adapt to various hosts and contribute to serious health issues demonstrates the intricate relationships between microbial pathogens and their hosts, underscoring the importance of monitoring such strains in public health contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain 559

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 559
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain 559


Gene Summary

Adenine Count

1380299 bp

Thymine Count

1370426 bp

Guanine Count

1397663 bp

Cytosine Count

1406134 bp

Genome Length

5555351 bp

Protein-coding Genes

4953 genes

Non-Coding Genes

545 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Capsid proteaseBK334_00005Not AvailablePositive1 - 43516182.1
Trna-thr;Not AvailableNot AvailablePositive28 - 103Not Available
rrna,type:5sNot AvailableNot AvailablePositive143 - 25818.01
Trna-thr;Not AvailableNot AvailablePositive346 - 421Not Available
CapsidBK334_00010Not AvailablePositive450 - 166745022.2
Trna-gly;Not AvailableNot AvailablePositive428 - 502Not Available
Trna-tyr;Not AvailableNot AvailablePositive619 - 703Not Available
Trna-thr;Not AvailableNot AvailablePositive712 - 787Not Available
Trna-leu;Not AvailableNot AvailablePositive904 - 990Not Available
Trna-cys;Not AvailableNot AvailablePositive1003 - 1076Not Available

Displaying genes 1 – 10 of 5498 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 74 in total