Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 559 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1380299 bp
Thymine Count
1370426 bp
Guanine Count
1397663 bp
Cytosine Count
1406134 bp
Genome Length
5555351 bp
Protein-coding Genes
4953 genes
Non-Coding Genes
545 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | BK334_00575 | Not Available | Positive | 114978 - 115886 | 34045.1 |
| dna endonuclease | BK334_00585 | Not Available | Positive | 116216 - 116779 | 21541.8 |
| sensor domain-containing diguanylate cyclase | BK334_00590 | Not Available | Negative | 116800 - 118032 | 46483.9 |
| zinc transporter zntb | BK334_00595 | Not Available | Positive | 118287 - 119270 | 36614.3 |
| hypothetical protein | BK334_00600 | Not Available | Positive | 119545 - 119718 | 6427.87 |
| atp-dependent rna helicase dbpa | BK334_00605 | Not Available | Positive | 119748 - 121121 | 49314.9 |
| trna 2-thiocytidine(32) synthetase ttca | BK334_00610 | Not Available | Negative | 121250 - 122185 | 35516.9 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 151710 - 152086 | Not Available |
| single-stranded dna-binding protein | BK334_00880 | Not Available | Positive | 167381 - 167908 | 19297.8 |
| hypothetical protein | BK334_00885 | Not Available | Positive | 167966 - 168199 | 9110.78 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





