Pseudomonas lini strain 48C10 48C10_NODE_225

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas lini strain 48C10, with the accession number MOBN00000000.1, is characterized by having a single replicon. This trait suggests a streamlined genetic architecture, which may influence its adaptability and metabolic capabilities. As a member of the Pseudomonas genus, this strain may possess distinctive features such as metabolic versatility, enabling it to thrive in diverse environments. Pseudomonas species are known for their ability to degrade a wide range of organic pollutants, which highlights their ecological importance in bioremediation processes. The presence of only one replicon in strain 48C10 could indicate efficient replication and stability of its genetic material, potentially enhancing its survival in competitive microbial communities. Understanding the genomic structure and replicon number of Pseudomonas lini strain 48C10 can provide insights into its ecological roles, particularly in nutrient cycling and the degradation of complex organic compounds. This strain may play a significant role in its environment, contributing to the breakdown of pollutants and influencing soil health and ecosystem dynamics. Further research into its specific metabolic pathways and environmental interactions could elucidate its potential applications in biotechnology and environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas lini
Strainstrain 48C10 48C10_NODE_225

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas lini strain 48C10 48C10_NODE_225
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas lini strain 48C10 48C10_NODE_225, whole genome shotgun

Gene Summary

Adenine Count

1349958 bp

Thymine Count

1347998 bp

Guanine Count

1932551 bp

Cytosine Count

1932023 bp

Genome Length

6568848 bp

Protein-coding Genes

5660 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acyl dehydrataseBK663_00165Not AvailablePositive37184 - 3803831166.9
histidine kinaseBK663_00170Not AvailableNegative38215 - 3861614949.2
pilus assembly proteinBK663_00175Not AvailableNegative38702 - 388996763.39
flp pilus assembly protein cpabBK663_00180Not AvailablePositive39214 - 4014333018.7
pilus assembly proteinBK663_00185Not AvailablePositive40233 - 4143844044.8
atpaseBK663_00190Not AvailablePositive41435 - 4271547237.4
type ii secretion system protein fBK663_00195Not AvailablePositive42726 - 4361032743.2
type ii secretion system protein fBK663_00200Not AvailablePositive43607 - 4449733148.6
dna-binding response regulatorBK663_00210Not AvailableNegative45917 - 4670529573.6
prepilin peptidaseBK663_00215Not AvailableNegative46819 - 4728916878.3

Displaying genes 111 – 120 of 5776 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.