Pseudomonas syringae group genomosp. 3 strain RM1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae group genomosp. 3 strain RM1 is characterized by having a single replicon, which is an essential trait for understanding its genomic organization and replication mechanisms. The strain is cataloged under the accession number MLEU00000000.1, providing a reference point for researchers interested in exploring its genetic makeup further. This strain belongs to the Pseudomonas syringae species complex, which is known for its role as a plant pathogen. Members of this group are often associated with significant agricultural impacts, as they can affect a wide range of plant hosts. The specific traits of strain RM1 may provide insights into its pathogenicity, host interactions, and environmental adaptability. In ecological terms, the presence of Pseudomonas syringae group genomosp. 3 strain RM1 in various environments indicates its potential role in plant-microbe interactions. Understanding its genomic structure and characteristics can aid in the development of strategies for managing diseases caused by this pathogen, particularly in agricultural settings. Further research on this strain could also contribute to broader ecological studies focusing on microbial diversity and its implications for ecosystem health and agricultural productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae group genomosp. 3
Strainstrain RM1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas syringae group genomosp. 3 strain RM1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas syringae group genomosp. 3 strain RM1 contig_95, whole

Gene Summary

Adenine Count

1294087 bp

Thymine Count

1308996 bp

Guanine Count

1856156 bp

Cytosine Count

1847650 bp

Genome Length

6306889 bp

Protein-coding Genes

5325 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iii secretion proteinBKM17_04510Not AvailablePositive1003087 - 100366821306.2
type iii secretion proteinBKM17_04515Not AvailablePositive1003763 - 10039878011.32
type iii secretion proteinBKM17_04520Not AvailablePositive1003974 - 100440515406.5
escc/yscc/hrcc family type iii secretion system outer membrane ring proteinBKM17_04525Not AvailablePositive1004407 - 100650676708.9
type iii secretion proteinBKM17_04530Not AvailablePositive1006503 - 10067067720.35
type iii secretion protein hrpvBKM17_04535Not AvailablePositive1006709 - 100706813886.4
escu/yscu/hrcu family type iii secretion system export apparatus switch proteinBKM17_04540Not AvailableNegative1007779 - 100885839852.4
esct/ysct/hrct family type iii secretion system export apparatus proteinBKM17_04545Not AvailableNegative1008855 - 100964928298.8
escs/yscs/hrcs family type iii secretion system export apparatus proteinBKM17_04550Not AvailableNegative1009650 - 10099169424.15
escr/yscr/hrcr family type iii secretion system export apparatus proteinBKM17_04555Not AvailableNegative1009924 - 101057724131.5

Displaying genes 911 – 920 of 5409 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.