Pseudomonas syringae group genomosp. 3 strain RM1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae group genomosp. 3 strain RM1 is characterized by having a single replicon, which is an essential trait for understanding its genomic organization and replication mechanisms. The strain is cataloged under the accession number MLEU00000000.1, providing a reference point for researchers interested in exploring its genetic makeup further. This strain belongs to the Pseudomonas syringae species complex, which is known for its role as a plant pathogen. Members of this group are often associated with significant agricultural impacts, as they can affect a wide range of plant hosts. The specific traits of strain RM1 may provide insights into its pathogenicity, host interactions, and environmental adaptability. In ecological terms, the presence of Pseudomonas syringae group genomosp. 3 strain RM1 in various environments indicates its potential role in plant-microbe interactions. Understanding its genomic structure and characteristics can aid in the development of strategies for managing diseases caused by this pathogen, particularly in agricultural settings. Further research on this strain could also contribute to broader ecological studies focusing on microbial diversity and its implications for ecosystem health and agricultural productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae group genomosp. 3
Strainstrain RM1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas syringae group genomosp. 3 strain RM1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas syringae group genomosp. 3 strain RM1 contig_95, whole

Gene Summary

Adenine Count

1294087 bp

Thymine Count

1308996 bp

Guanine Count

1856156 bp

Cytosine Count

1847650 bp

Genome Length

6306889 bp

Protein-coding Genes

5325 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tir chaperone family proteinBKM17_04460Not AvailablePositive989196 - 98958514383.2
type iii effectorBKM17_04465Not AvailableNegative989633 - 995038195188.0
lytic transglycosylaseBKM17_04470Not AvailablePositive995258 - 99674254048.6
aaa family atpaseBKM17_04475Not AvailablePositive997917 - 99876531221.1
aaa family atpaseBKM17_04480Not AvailablePositive998811 - 99971933238.3
hypothetical proteinBKM17_04485Not AvailablePositive999813 - 100015411361.5
type iii secretion protein hrpzBKM17_04490Not AvailablePositive1000210 - 100130736098.6
esci/ysci/hrpb family type iii secretion system inner rod proteinBKM17_04495Not AvailablePositive1001335 - 100170913192.7
escj/yscj/hrcj family type iii secretion inner membrane ring proteinBKM17_04500Not AvailablePositive1001718 - 100252429171.5
type iii secretion proteinBKM17_04505Not AvailablePositive1002524 - 100305120094.7

Displaying genes 901 – 910 of 5409 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.