Pseudomonas avellanae strain R25260

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas avellanae strain R25260 is a notable bacterium characterized by its single replicon structure. This strain is primarily associated with Corylus avellana, commonly known as the hazelnut tree. It is particularly significant due to its role in causing decline disease in these hosts, which can have detrimental effects on hazelnut cultivation. The health effects attributed to Pseudomonas avellanae strain R25260 highlight the bacterium's pathogenic nature, indicating that it can adversely impact the growth and productivity of Corylus avellana. This decline disease is a critical concern for farmers and researchers focusing on the health of hazelnut orchards. The strain is cataloged under the accession number MLEG00000000.1, which provides a reference for further studies and genetic analysis. Understanding the genetic makeup and pathogenic mechanisms of Pseudomonas avellanae is essential for developing management strategies to mitigate the decline disease it causes. Ecologically, the interaction between Pseudomonas avellanae and Corylus avellana underscores the complex relationships in plant-microbe dynamics. This relationship exemplifies how certain bacteria can influence agricultural productivity and ecosystem balance. By studying such interactions, researchers can gain insights into disease management and improve the resilience of hazelnut crops against bacterial pathogens.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas avellanae
Strainstrain R25260

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas avellanae strain R25260
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Corylus avellana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas avellanae strain R25260 contig_223, whole genome

Gene Summary

Adenine Count

1337769 bp

Thymine Count

1363511 bp

Guanine Count

1911399 bp

Cytosine Count

1882155 bp

Genome Length

6494834 bp

Protein-coding Genes

5466 genes

Non-Coding Genes

196 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase sigma factor rpodBKM20_21340Not AvailableNegative4792591 - 479444169467.0
dna primaseBKM20_21345Not AvailableNegative4794509 - 479646772909.4
30s ribosomal protein s21BKM20_21350Not AvailableNegative4796936 - 47971518386.25
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsadBKM20_21355Not AvailablePositive4797349 - 479837436439.0
glycerol-3-phosphate acyltransferaseBKM20_21360Not AvailableNegative4798427 - 479899620107.2
dihydroneopterin aldolaseBKM20_21365Not AvailablePositive4799071 - 479942412988.5
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseBKM20_21370Not AvailablePositive4799415 - 479993919229.2
multifunctional cca trna nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphataseBKM20_21375Not AvailableNegative4800241 - 480147045862.9
spovr family proteinBKM20_21380Not AvailableNegative4801568 - 480313061183.4
hypothetical proteinBKM20_21385Not AvailableNegative4803127 - 480439848683.8

Displaying genes 4221 – 4230 of 5662 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Decline diseaseCausesPMC9104263

Displaying health effects 1 – 1 of 1 in total