Pseudomonas avellanae strain R25260

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas avellanae strain R25260 is a notable bacterium characterized by its single replicon structure. This strain is primarily associated with Corylus avellana, commonly known as the hazelnut tree. It is particularly significant due to its role in causing decline disease in these hosts, which can have detrimental effects on hazelnut cultivation. The health effects attributed to Pseudomonas avellanae strain R25260 highlight the bacterium's pathogenic nature, indicating that it can adversely impact the growth and productivity of Corylus avellana. This decline disease is a critical concern for farmers and researchers focusing on the health of hazelnut orchards. The strain is cataloged under the accession number MLEG00000000.1, which provides a reference for further studies and genetic analysis. Understanding the genetic makeup and pathogenic mechanisms of Pseudomonas avellanae is essential for developing management strategies to mitigate the decline disease it causes. Ecologically, the interaction between Pseudomonas avellanae and Corylus avellana underscores the complex relationships in plant-microbe dynamics. This relationship exemplifies how certain bacteria can influence agricultural productivity and ecosystem balance. By studying such interactions, researchers can gain insights into disease management and improve the resilience of hazelnut crops against bacterial pathogens.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas avellanae
Strainstrain R25260

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas avellanae strain R25260
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Corylus avellana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas avellanae strain R25260 contig_223, whole genome

Gene Summary

Adenine Count

1337769 bp

Thymine Count

1363511 bp

Guanine Count

1911399 bp

Cytosine Count

1882155 bp

Genome Length

6494834 bp

Protein-coding Genes

5466 genes

Non-Coding Genes

196 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinBKM20_21090Not AvailableNegative4731977 - 473281029258.0
gluconolactonaseBKM20_21095Not AvailableNegative4732920 - 473401139810.9
hypothetical proteinBKM20_21100Not AvailableNegative4734169 - 47344118663.29
hypothetical proteinBKM20_21105Not AvailablePositive4734506 - 473487713680.2
duf1289 domain-containing proteinBKM20_21110Not AvailablePositive4734879 - 47350616811.48
mfs transporterBKM20_21115Not AvailablePositive4735168 - 473642143236.3
hydrolaseBKM20_21120Not AvailableNegative4736428 - 473717726357.4
dipeptide abc transporter atp-binding proteinBKM20_21125Not AvailableNegative4737587 - 473856135826.5
dipeptide abc transporter atp-binding protein dppdBKM20_21130Not AvailableNegative4738561 - 473952934788.5
dipeptide abc transporter permease dppcBKM20_21135Not AvailableNegative4739540 - 474045132581.8

Displaying genes 4171 – 4180 of 5662 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Decline diseaseCausesPMC9104263

Displaying health effects 1 – 1 of 1 in total