Pseudomonas avellanae strain R25260

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas avellanae strain R25260 is a notable bacterium characterized by its single replicon structure. This strain is primarily associated with Corylus avellana, commonly known as the hazelnut tree. It is particularly significant due to its role in causing decline disease in these hosts, which can have detrimental effects on hazelnut cultivation. The health effects attributed to Pseudomonas avellanae strain R25260 highlight the bacterium's pathogenic nature, indicating that it can adversely impact the growth and productivity of Corylus avellana. This decline disease is a critical concern for farmers and researchers focusing on the health of hazelnut orchards. The strain is cataloged under the accession number MLEG00000000.1, which provides a reference for further studies and genetic analysis. Understanding the genetic makeup and pathogenic mechanisms of Pseudomonas avellanae is essential for developing management strategies to mitigate the decline disease it causes. Ecologically, the interaction between Pseudomonas avellanae and Corylus avellana underscores the complex relationships in plant-microbe dynamics. This relationship exemplifies how certain bacteria can influence agricultural productivity and ecosystem balance. By studying such interactions, researchers can gain insights into disease management and improve the resilience of hazelnut crops against bacterial pathogens.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas avellanae
Strainstrain R25260

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas avellanae strain R25260
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Corylus avellana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas avellanae strain R25260 contig_223, whole genome

Gene Summary

Adenine Count

1337769 bp

Thymine Count

1363511 bp

Guanine Count

1911399 bp

Cytosine Count

1882155 bp

Genome Length

6494834 bp

Protein-coding Genes

5466 genes

Non-Coding Genes

196 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonuclease hiiBKM20_06975Not AvailableNegative1574535 - 157518823135.5
lipid-a-disaccharide synthaseBKM20_06980Not AvailableNegative1575200 - 157634241629.4
acyl-[acyl-carrier-protein]--udp-n- acetylglucosamine o-acyltransferaseBKM20_06985Not AvailableNegative1576345 - 157712127966.5
3-hydroxyacyl-[acyl-carrier-protein] dehydratase fabzBKM20_06990Not AvailableNegative1577118 - 157755816714.4
udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferaseBKM20_06995Not AvailableNegative1577668 - 157872336676.0
hypothetical proteinBKM20_07000Not AvailableNegative1578726 - 157922918900.1
outer membrane protein assembly factor bamaBKM20_07005Not AvailableNegative1579275 - 158166287509.6
rip metalloprotease rsepBKM20_07010Not AvailableNegative1581750 - 158310248359.2
1-deoxy-d-xylulose-5-phosphate reductoisomeraseBKM20_07015Not AvailableNegative1583220 - 158441042126.0
phosphatidate cytidylyltransferaseBKM20_07020Not AvailableNegative1584407 - 158522229136.7

Displaying genes 1501 – 1510 of 5662 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Decline diseaseCausesPMC9104263

Displaying health effects 1 – 1 of 1 in total