Rodentibacter ratti strain Ppn157

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter ratti strain Ppn157 is characterized by its rod shape and possesses a single replicon. The genome of this strain is available under the accession number MLAH00000000.1. Rodentibacter ratti is a member of the family Pasteurellaceae, which includes a variety of bacteria often associated with animal hosts. The specific traits of strain Ppn157 suggest that it may play a role in the microbiota of rodents, potentially influencing host health and ecology. As a rod-shaped bacterium, it may exhibit specific growth patterns and interactions with other microbial species within its environment. The presence of a single replicon indicates a streamlined genomic organization, which can be advantageous for survival and adaptation in a specific ecological niche. This trait may facilitate efficient replication and regulation of essential genes, contributing to the bacterium's ability to thrive in the unique physiological conditions often found in rodent habitats. Understanding the characteristics of Rodentibacter ratti strain Ppn157 can provide insights into its ecological roles, including its interactions with rodent hosts and other microorganisms. Research into this strain could further elucidate the contributions of such bacteria to the health of rodent populations and their environments, highlighting the complex relationships within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter ratti
Strainstrain Ppn157

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter ratti strain Ppn157 contig_144, whole genome shotgun

Gene Summary

Adenine Count

720503 bp

Thymine Count

714181 bp

Guanine Count

473328 bp

Cytosine Count

496576 bp

Genome Length

2404588 bp

Protein-coding Genes

2045 genes

Non-Coding Genes

315 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
monothiol glutaredoxin, grx4 familyBKG93_01875Not AvailablePositive381826 - 38215212040.7
thiamine abc transporter substrate binding subunitBKG93_01880Not AvailablePositive382398 - 38339337332.6
thiamine/thiamine pyrophosphate abc transporter permease thipBKG93_01885Not AvailablePositive383400 - 38500760737.0
thiamine abc transporter, atp-binding proteinBKG93_01890Not AvailablePositive385000 - 38562923742.1
biotin synthase biobBKG93_01895Not AvailablePositive385638 - 38665437515.0
sodium/proline symporterBKG93_01900Not AvailableNegative386704 - 38819453967.5
bifunctional proline dehydrogenase/l-glutamate gamma-semialdehyde dehydrogenaseBKG93_01905Not AvailableNegative388361 - 391813128633.0
thioredoxinBKG93_01910Not AvailableNegative391991 - 39231411612.2
2-hydroxyacid dehydrogenaseBKG93_01915Not AvailableNegative392432 - 39342737094.9
cystathionine gamma-synthaseBKG93_01920Not AvailableNegative393444 - 39455640768.7

Displaying genes 601 – 610 of 2360 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.