Rodentibacter ratti strain Ppn157

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter ratti strain Ppn157 is characterized by its rod shape and possesses a single replicon. The genome of this strain is available under the accession number MLAH00000000.1. Rodentibacter ratti is a member of the family Pasteurellaceae, which includes a variety of bacteria often associated with animal hosts. The specific traits of strain Ppn157 suggest that it may play a role in the microbiota of rodents, potentially influencing host health and ecology. As a rod-shaped bacterium, it may exhibit specific growth patterns and interactions with other microbial species within its environment. The presence of a single replicon indicates a streamlined genomic organization, which can be advantageous for survival and adaptation in a specific ecological niche. This trait may facilitate efficient replication and regulation of essential genes, contributing to the bacterium's ability to thrive in the unique physiological conditions often found in rodent habitats. Understanding the characteristics of Rodentibacter ratti strain Ppn157 can provide insights into its ecological roles, including its interactions with rodent hosts and other microorganisms. Research into this strain could further elucidate the contributions of such bacteria to the health of rodent populations and their environments, highlighting the complex relationships within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter ratti
Strainstrain Ppn157

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter ratti strain Ppn157 contig_144, whole genome shotgun

Gene Summary

Adenine Count

720503 bp

Thymine Count

714181 bp

Guanine Count

473328 bp

Cytosine Count

496576 bp

Genome Length

2404588 bp

Protein-coding Genes

2045 genes

Non-Coding Genes

315 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methionine abc transporter substrate-binding protein metqBKG93_04945Not AvailablePositive1013532 - 101435629938.7
50s ribosomal protein l1BKG93_04950Not AvailableNegative1014565 - 101525424081.3
50s ribosomal protein l11BKG93_04955Not AvailableNegative1015259 - 101568714932.5
transcription termination/antitermination protein nusgBKG93_04960Not AvailableNegative1015931 - 101648821294.3
preprotein translocase subunit seceBKG93_04965Not AvailableNegative1016490 - 101690315350.9
atp-dependent protease atp-binding subunit clpxBKG93_04970Not AvailableNegative1017045 - 101829545974.0
atp-dependent clp endopeptidase, proteolytic subunit clppBKG93_04975Not AvailableNegative1018305 - 101888621396.9
trigger factorBKG93_04980Not AvailableNegative1019001 - 102029948361.5
peptidoglycan-binding protein lysmBKG93_04985Not AvailableNegative1020518 - 102095815477.3
hypothetical proteinBKG93_04990Not AvailablePositive1021131 - 102196130082.1

Displaying genes 1151 – 1160 of 2360 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.