Rodentibacter caecimuris strain 2002178011

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter caecimuris strain 2002178011 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain is part of the Rodentibacter genus, which is notable for its association with rodent hosts. The genomic data of strain 2002178011 is available under the accession number MLAD00000000.1, indicating that it has been sequenced and cataloged in a public database. One significant trait of this strain is that it possesses a single replicon, which suggests a streamlined genomic structure. This can be indicative of its evolutionary adaptations and ecological niche, especially in relation to its host organisms. Being Gram-negative, Rodentibacter caecimuris strain 2002178011 likely possesses an outer membrane, which is characteristic of this group and may contribute to its survival and interaction with the host's immune system. The ecological insight drawn from the existence of this strain points to its potential role in the gastrointestinal microbiome of rodents. Such bacteria can have symbiotic relationships with their hosts, aiding in digestion or nutrient absorption. Understanding the traits of Rodentibacter caecimuris strain 2002178011 can provide valuable information about the dynamics of microbial communities in rodent species and their influence on host health and ecosystem functions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter caecimuris
Strainstrain 2002178011

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter caecimuris strain 2002178011 contig_156, whole

Gene Summary

Adenine Count

745079 bp

Thymine Count

746541 bp

Guanine Count

502320 bp

Cytosine Count

499371 bp

Genome Length

2493311 bp

Protein-coding Genes

2156 genes

Non-Coding Genes

163 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tmrna,resume consensus sequence (at 85): aatagtcgcaaacgacgaNot AvailableNot AvailablePositive267283 - 267647Not Available
integraseBKG99_01390Not AvailablePositive267982 - 26923248215.1
cell filamentation protein ficBKG99_01395Not AvailablePositive269339 - 27009728950.8
ci repressor-like proteinBKG99_01400Not AvailableNegative270446 - 27094319220.9
hypothetical proteinBKG99_01405Not AvailablePositive271515 - 27403491499.8
bifunctional folylpolyglutamate synthase/dihydrofolate synthaseBKG99_01410Not AvailableNegative274550 - 27585448506.2
acetyl-coa carboxylase subunit betaBKG99_01415Not AvailableNegative275856 - 27676133301.4
trna pseudouridine(38-40) synthase truaBKG99_01420Not AvailableNegative276847 - 27764130019.8
hypothetical proteinBKG99_01425Not AvailablePositive277985 - 27870127492.1
50s ribosomal protein l25BKG99_01430Not AvailableNegative278966 - 27925310638.8

Displaying genes 371 – 380 of 2319 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.