Rodentibacter caecimuris strain 2002178011

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Rodentibacter

Description

Rodentibacter caecimuris strain 2002178011 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain is part of the Rodentibacter genus, which is notable for its association with rodent hosts. The genomic data of strain 2002178011 is available under the accession number MLAD00000000.1, indicating that it has been sequenced and cataloged in a public database. One significant trait of this strain is that it possesses a single replicon, which suggests a streamlined genomic structure. This can be indicative of its evolutionary adaptations and ecological niche, especially in relation to its host organisms. Being Gram-negative, Rodentibacter caecimuris strain 2002178011 likely possesses an outer membrane, which is characteristic of this group and may contribute to its survival and interaction with the host's immune system. The ecological insight drawn from the existence of this strain points to its potential role in the gastrointestinal microbiome of rodents. Such bacteria can have symbiotic relationships with their hosts, aiding in digestion or nutrient absorption. Understanding the traits of Rodentibacter caecimuris strain 2002178011 can provide valuable information about the dynamics of microbial communities in rodent species and their influence on host health and ecosystem functions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusRodentibacter
SpeciesRodentibacter caecimuris
Strainstrain 2002178011

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rodentibacter caecimuris strain 2002178011 contig_156, whole

Gene Summary

Adenine Count

745079 bp

Thymine Count

746541 bp

Guanine Count

502320 bp

Cytosine Count

499371 bp

Genome Length

2493311 bp

Protein-coding Genes

2156 genes

Non-Coding Genes

163 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome c biogenesis protein ccmeBKG99_05405Not AvailableNegative1125800 - 112632419314.5
heme exporter protein ccmdBKG99_05410Not AvailableNegative1126321 - 11265247865.68
heme abc transporter permeaseBKG99_05415Not AvailableNegative1126552 - 112729527751.8
heme exporter protein ccmbBKG99_05420Not AvailableNegative1127355 - 112802023845.7
heme abc transporter atp-binding protein ccmaBKG99_05425Not AvailableNegative1128025 - 112866323698.5
superoxide dismutaseBKG99_05430Not AvailablePositive1128955 - 112960224115.4
isoprenylcysteine carboxyl methyltransferaseBKG99_05435Not AvailableNegative1129644 - 113008717530.9
hypothetical proteinBKG99_05440Not AvailableNegative1130117 - 113073122424.5
histidine--trna ligaseBKG99_05445Not AvailableNegative1130750 - 113202147743.3
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthaseBKG99_05450Not AvailableNegative1132031 - 113313740091.5

Displaying genes 1121 – 1130 of 2319 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.