Pseudomonas putida strain GM4FR

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida strain GM4FR is a Gram-negative, mesophilic, rod-shaped bacterium that typically exists in soil and wastewater environments. As a heterotroph, it derives energy from organic compounds, which supports its free-living lifestyle. This strain is characterized by its ability to move, facilitated by the presence of flagella, and it possesses a single replicon and two membranes. Pseudomonas putida GM4FR is facultatively anaerobic, meaning it can survive in both the presence and absence of oxygen. While it is not known for sporulation, it has been associated with various hosts, including Homo sapiens, several plant species such as Triticum aestivum (wheat), Solanum lycopersicum (tomato), and Oryza sativa (rice), as well as other organisms like Chlamydomonas reinhardtii and Botryococcus braunii. Notably, this strain is implicated in nosocomial infections, indicating its pathogenic potential in animal hosts. This aspect highlights the significance of monitoring Pseudomonas putida GM4FR in both environmental and clinical settings, especially given its diverse ecological interactions. In summary, Pseudomonas putida strain GM4FR exemplifies the complexity of microbial life in soil and wastewater ecosystems. Its versatility as a free-living organism and its potential to cause infections emphasize the need for further understanding of its ecological roles and implications for human and environmental health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
Strainstrain GM4FR

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida strain GM4FR
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas putida strain GM4FR PSEMO_contig000079, whole genome

Gene Summary

Adenine Count

1291889 bp

Thymine Count

1290188 bp

Guanine Count

2230186 bp

Cytosine Count

2251989 bp

Genome Length

7064252 bp

Protein-coding Genes

6119 genes

Non-Coding Genes

235 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cys-trna(pro)/cys-trna(cys) deacylase ybakPSEMO_02010Not AvailableNegative208767 - 20923716623.2
glycerol uptake facilitator proteinPSEMO_02020Not AvailablePositive209540 - 21039129380.0
glycerol kinasePSEMO_02030Not AvailablePositive210449 - 21194855253.5
glycerol-3-phosphate regulon repressorPSEMO_02040Not AvailablePositive212087 - 21284227765.3
aerobic glycerol-3-phosphate dehydrogenasePSEMO_02050Not AvailablePositive213029 - 21454956054.1
glutamate/aspartate periplasmic-binding protein precursorPSEMO_02060Not AvailablePositive215231 - 21615133544.4
putative glutamine abc transporter permease protein glnmPSEMO_02070Not AvailablePositive216298 - 21704427542.2
glutamate/aspartate transport system permease protein gltkPSEMO_02080Not AvailablePositive217044 - 21771524559.9
glutamine transport atp-binding protein glnqPSEMO_02090Not AvailablePositive217712 - 21844627000.9
c4-dicarboxylate transport sensor protein dctbPSEMO_02100Not AvailablePositive218498 - 22040570555.6

Displaying genes 421 – 430 of 6354 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Nosocomial infectionsCausesPMC11585281
Nosocomial infectionsCausesPMC13243026

Displaying health effects 1 – 2 of 2 in total