Caedibacter sp. 38-128

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Fastidiosibacteraceae

Genus

Caedibacter

Description

Caedibacter sp. 38-128 is characterized by having a single replicon, indicating a streamlined genomic structure. This trait may contribute to its adaptability and efficiency in replicating under specific environmental conditions. The organism is cataloged under the accession number MKUU00000000.1, which serves as a reference for genomic and taxonomic studies related to this bacterium. The simplicity of having one replicon can be significant in understanding the bacterium's metabolic processes and ecological interactions. In microbial ecology, organisms with fewer replicons are often more specialized, which can affect their roles within different ecosystems. This specialization can lead to unique interactions with host organisms, particularly in symbiotic or pathogenic relationships. Given the nature of Caedibacter sp. and its specialized traits, studying its interactions within its ecological niche may provide insights into microbial community dynamics and the evolution of symbiotic relationships. Understanding these dynamics can further illuminate the roles such bacteria play in broader environmental contexts, such as nutrient cycling or ecosystem stability. The single-replicon nature of Caedibacter sp. 38-128 may suggest its evolutionary adaptations to specific niches, highlighting how microbial organisms can thrive in diverse environments through specialized genomic characteristics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyFastidiosibacteraceae
GenusCaedibacter
SpeciesCaedibacter sp. 38-128
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Caedibacter sp. 38-128 SCNpilot_expt_500_p_scaffold_994,

Gene Summary

Adenine Count

608231 bp

Thymine Count

603275 bp

Guanine Count

370912 bp

Cytosine Count

375303 bp

Genome Length

1957730 bp

Protein-coding Genes

1719 genes

Non-Coding Genes

41 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-directed rna polymerase subunit omegaBGO76_04885Not AvailablePositive548824 - 54918913548.5
bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolaseBGO76_04890Not AvailablePositive549300 - 55143880896.3
hypothetical proteinBGO76_04895Not AvailableNegative551498 - 5517679886.78
hypothetical proteinBGO76_04900Not AvailableNegative551798 - 5519776587.36
endopeptidase laBGO76_04905Not AvailableNegative552085 - 55450890401.0
atp-dependent protease atp-binding subunit clpxBGO76_04910Not AvailableNegative554605 - 55587046281.9
atp-dependent clp endopeptidase, proteolytic subunit clppBGO76_04915Not AvailableNegative555977 - 55655220925.3
trigger factorBGO76_04920Not AvailableNegative556630 - 55799751811.2
Trna-leuNot AvailableNot AvailablePositive558033 - 558117Not Available
hypothetical proteinBGO76_04930Not AvailableNegative558369 - 55908825347.5

Displaying genes 491 – 500 of 1760 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.