Pseudomonas koreensis strain IMBL1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas koreensis strain IMBL1 is a Gram-negative bacterium primarily found in Korean agricultural soil, specifically within the rice rhizosphere. This strain is characterized by having a single replicon, which may influence its genetic stability and adaptability in its natural habitat. One notable health effect associated with Pseudomonas koreensis strain IMBL1 is its potential to cause infectious keratitis in humans (Homo sapiens). This condition is an eye infection that can lead to significant morbidity if not treated effectively. The presence of this bacterium in agricultural environments raises important considerations regarding its interaction with human health, particularly for individuals working in or near rice cultivation areas. The strain is cataloged under the accession number MKQJ00000000.1, allowing for its identification and further study within microbiological research. The ecological implications of Pseudomonas koreensis strain IMBL1's presence in the rice rhizosphere suggest that it may play a role in the complex microbial community that influences soil health and plant growth. This highlights the interconnectedness of soil microbiomes and their potential impact on both agriculture and human health, emphasizing the need for continued research into the ecological dynamics of Pseudomonas species in agricultural settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas koreensis
Strainstrain IMBL1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas koreensis strain IMBL1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKorean agricultural soil; rice rhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas koreensis strain IMBL1 IMBL1Contig9, whole genome

Gene Summary

Adenine Count

1221259 bp

Thymine Count

1224723 bp

Guanine Count

1831667 bp

Cytosine Count

1822958 bp

Genome Length

6100607 bp

Protein-coding Genes

5164 genes

Non-Coding Genes

266 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rnd transporterBJN42_02845Not AvailablePositive4657346 - 465878851190.6
nadh:ubiquinone oxidoreductase subunit nBJN42_02850Not AvailablePositive4658882 - 465951724298.4
hypothetical proteinBJN42_02855Not AvailablePositive4659767 - 466127253366.6
poly-beta-1,6 n-acetyl-d-glucosamine export porin pgaaBJN42_02860Not AvailablePositive4661509 - 466398991767.3
poly-beta-1,6-n-acetyl-d-glucosamine n-deacetylaseBJN42_02865Not AvailablePositive4664002 - 466599974678.7
poly-beta-1,6 n-acetyl-d-glucosamine synthaseBJN42_02870Not AvailablePositive4666001 - 466735651233.1
poly-beta-1,6-n-acetyl-d-glucosamine biosynthesis protein pgadBJN42_02875Not AvailablePositive4667353 - 466788320116.7
pyridine nucleotide-disulfide oxidoreductaseBJN42_02880Not AvailableNegative4667902 - 466942555037.7
pebp family proteinBJN42_02885Not AvailablePositive4669565 - 467012519662.4
hypothetical proteinBJN42_02890Not AvailablePositive4670172 - 467044110349.6

Displaying genes 4221 – 4230 of 5430 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infectious keratitisCausesPMC7747071

Displaying health effects 1 – 1 of 1 in total