Pseudomonas koreensis strain IMBL1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas koreensis strain IMBL1 is a Gram-negative bacterium primarily found in Korean agricultural soil, specifically within the rice rhizosphere. This strain is characterized by having a single replicon, which may influence its genetic stability and adaptability in its natural habitat. One notable health effect associated with Pseudomonas koreensis strain IMBL1 is its potential to cause infectious keratitis in humans (Homo sapiens). This condition is an eye infection that can lead to significant morbidity if not treated effectively. The presence of this bacterium in agricultural environments raises important considerations regarding its interaction with human health, particularly for individuals working in or near rice cultivation areas. The strain is cataloged under the accession number MKQJ00000000.1, allowing for its identification and further study within microbiological research. The ecological implications of Pseudomonas koreensis strain IMBL1's presence in the rice rhizosphere suggest that it may play a role in the complex microbial community that influences soil health and plant growth. This highlights the interconnectedness of soil microbiomes and their potential impact on both agriculture and human health, emphasizing the need for continued research into the ecological dynamics of Pseudomonas species in agricultural settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas koreensis
Strainstrain IMBL1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas koreensis strain IMBL1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKorean agricultural soil; rice rhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas koreensis strain IMBL1 IMBL1Contig9, whole genome

Gene Summary

Adenine Count

1221259 bp

Thymine Count

1224723 bp

Guanine Count

1831667 bp

Cytosine Count

1822958 bp

Genome Length

6100607 bp

Protein-coding Genes

5164 genes

Non-Coding Genes

266 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
stress response serine/threonine protein kinase yiheBJN42_26895Not AvailablePositive4316797 - 431777137219.4
chloramphenical resistance permease rardBJN42_26900Not AvailablePositive4317933 - 431882032798.0
glycine cleavage system protein rBJN42_26905Not AvailableNegative4319044 - 431956218800.9
malate synthase gBJN42_26910Not AvailablePositive4320185 - 432236278995.1
response regulatorBJN42_26915Not AvailableNegative4322574 - 432302016149.7
cyclic nucleotide-binding proteinBJN42_26920Not AvailablePositive4323270 - 432521072731.3
dna polymerase iii subunit epsilonBJN42_26925Not AvailablePositive4325207 - 432591426349.7
rna polymerase subunit sigmaBJN42_26930Not AvailablePositive4326115 - 432663319626.8
amino acid abc transporter substrate-binding proteinBJN42_26935Not AvailablePositive4326630 - 432760435561.6
tonb-dependent receptorBJN42_26940Not AvailablePositive4327873 - 433029988128.4

Displaying genes 3941 – 3950 of 5430 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infectious keratitisCausesPMC7747071

Displaying health effects 1 – 1 of 1 in total